7P0A
CRYSTAL STRUCTURE OF THE MURINE CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX H-2DB IN COMPLEX WITH LCMV-DERIVED GP33 PEPTIDE with D-AMINOACID (p3P6f)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D (A, D) | H-2 class I histocompatibility antigen, D-B alpha chain | polymer | 276 | 32087.7 | 2 | UniProt (P01899) Pfam (PF00129) Pfam (PF07654) | Mus musculus (House Mouse) | H-2D(B) |
| 2 | B, E (B, E) | Beta-2-microglobulin | polymer | 101 | 11892.6 | 2 | UniProt (P01887) Pfam (PF07654) | Mus musculus (Mouse) | |
| 3 | C, F (C, F) | Stable signal peptide | polymer | 9 | 1043.2 | 2 | UniProt (P09991) | Lymphocytic choriomeningitis virus (strain Armstrong) | SSP |
| 4 | G, H, I, J, K... (A, D, E) | SULFATE ION | non-polymer | 96.1 | 6 | Chemie (SO4) | |||
| 5 | M, N (E) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
| 6 | O, P, Q, R, S... (A, B, C, D, E...) | water | water | 18.0 | 118 | Chemie (HOH) |
Sequence modifications
B, E: 1 - 99 (UniProt: P01887)
C, F: 1 - 9 (UniProt: P09991)
| PDB | External Database | Details |
|---|---|---|
| Met -1 | - | initiating methionine |
| Gly 0 | - | expression tag |
| Asp 85 | Ala 105 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Pro 3 | Val 35 | conflict |
| Dpn 6 | Phe 38 | engineered mutation |
| Met 9 | Cys 41 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 90047.0 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 647.3 | |
| All* | Total formula weight | 90694.3 |
