7OYH
Crystal structure of depupylase Dop in complex with Pup and ADP/tetrafluoromagnesate
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Depupylase | polymer | 508 | 57288.3 | 1 | UniProt (A0LU48) Pfam (PF03136) In PDB | Acidothermus cellulolyticus | |
2 | B | Prokaryotic ubiquitin-like protein Pup | polymer | 28 | 3199.4 | 1 | UniProt (A0LU49) Pfam (PF05639) In PDB | Acidothermus cellulolyticus | Bacterial ubiquitin-like modifier |
3 | A, B | MAGNESIUM ION | non-polymer | 24.3 | 5 | Chemie (MG) | |||
4 | A | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) | |||
5 | B, A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 12 | Chemie (EDO) | |||
6 | A | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 4 | Chemie (PEG) | |||
7 | A | ACETATE ION | non-polymer | 59.0 | 3 | Chemie (ACT) | |||
8 | A | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 2 | Chemie (PGE) | |||
9 | A | SULFATE ION | non-polymer | 96.1 | 2 | Chemie (SO4) | |||
10 | A | TETRAFLUOROMAGNESATE(2-) | non-polymer | 100.3 | 1 | Chemie (MF4) | |||
11 | water | water | 18.0 | 374 | Chemie (HOH) |
Sequence modifications
A: 1 - 502 (UniProt: A0LU48)
PDB | External Database | Details |
---|---|---|
Glu 503 | - | expression tag |
Asn 504 | - | expression tag |
Leu 505 | - | expression tag |
Tyr 506 | - | expression tag |
Phe 507 | - | expression tag |
Gln 508 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 60487.7 | |
Non-Polymers* | Number of molecules | 30 |
Total formula weight | 2487.9 | |
All* | Total formula weight | 62975.6 |