7OYF
Crystal structure of depupylase Dop in complex with Pup and ADP/trifluoromagnesate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Depupylase | polymer | 508 | 57288.3 | 1 | UniProt (A0LU48) Pfam (PF03136) | Acidothermus cellulolyticus | |
| 2 | B (B) | Prokaryotic ubiquitin-like protein Pup | polymer | 28 | 3199.4 | 1 | UniProt (A0LU49) Pfam (PF05639) | Acidothermus cellulolyticus | Bacterial ubiquitin-like modifier |
| 3 | C, D, E (A) | MAGNESIUM ION | non-polymer | 24.3 | 3 | Chemie (MG) | |||
| 4 | F (A) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) | |||
| 5 | G, H, I, J, K... (A, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 7 | Chemie (EDO) | |||
| 6 | M, N (A) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 2 | Chemie (PEG) | |||
| 7 | O (A) | ACETATE ION | non-polymer | 59.0 | 1 | Chemie (ACT) | |||
| 8 | P, Q, R (A) | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 3 | Chemie (PGE) | |||
| 9 | S (A) | trifluoromagnesate monohydrate | non-polymer | 97.3 | 1 | Chemie (KQB) | |||
| 10 | U, V (A, B) | water | water | 18.0 | 301 | Chemie (HOH) |
Sequence modifications
A: 1 - 502 (UniProt: A0LU48)
| PDB | External Database | Details |
|---|---|---|
| Glu 503 | - | expression tag |
| Asn 504 | - | expression tag |
| Leu 505 | - | expression tag |
| Tyr 506 | - | expression tag |
| Phe 507 | - | expression tag |
| Gln 508 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 60487.7 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 1753.7 | |
| All* | Total formula weight | 62241.4 |
