7OXY
Crystal structure of depupylase Dop in complex with Pup and AMP-PCP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Depupylase | polymer | 508 | 57288.3 | 1 | UniProt (A0LU48) Pfam (PF03136) | Acidothermus cellulolyticus | |
| 2 | B (B) | Prokaryotic ubiquitin-like protein Pup | polymer | 28 | 3198.4 | 1 | UniProt (A0LU49) Pfam (PF05639) | Acidothermus cellulolyticus (strain ATCC 43068 / 11B) | Bacterial ubiquitin-like modifier |
| 3 | C, D, E, F (A) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
| 4 | G, H, I, J, K (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 5 | Chemie (EDO) | |||
| 5 | L (A) | PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER | non-polymer | 505.2 | 1 | Chemie (ACP) | |||
| 6 | M, N, O, P (A) | ACETATE ION | non-polymer | 59.0 | 4 | Chemie (ACT) | |||
| 7 | Q, R, S (A) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 3 | Chemie (PEG) | |||
| 8 | T, U (A) | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 2 | Chemie (PGE) | |||
| 9 | V, W (A, B) | water | water | 18.0 | 326 | Chemie (HOH) |
Sequence modifications
A: 1 - 502 (UniProt: A0LU48)
B: 44 - 71 (UniProt: A0LU49)
| PDB | External Database | Details |
|---|---|---|
| Glu 503 | - | expression tag |
| Asn 504 | - | expression tag |
| Leu 505 | - | expression tag |
| Tyr 506 | - | expression tag |
| Phe 507 | - | expression tag |
| Gln 508 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gln 71 | Glu 71 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 60486.7 | |
| Non-Polymers* | Number of molecules | 19 |
| Total formula weight | 1767.7 | |
| All* | Total formula weight | 62254.4 |
