7OLD
Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | 26S rRNA | polymer | 3337 | 1078716.1 | 1 | Chaetomium thermophilum var. thermophilum DSM 1495 | ||
| 2 | B (2) | 18S rRNA | polymer | 1796 | 578887.6 | 1 | Chaetomium thermophilum var. thermophilum DSM 1495 | ||
| 3 | C (3) | 5S rRNA | polymer | 120 | 38596.9 | 1 | Chaetomium thermophilum var. thermophilum DSM 1495 | ||
| 4 | D (4) | 5.8S rRNA | polymer | 156 | 50147.7 | 1 | Chaetomium thermophilum var. thermophilum DSM 1495 | ||
| 5 | E (5) | pe/E tRNA | polymer | 75 | 24004.3 | 1 | Chaetomium thermophilum var. thermophilum DSM 1495 | ||
| 6 | F (A) | Putative guanine nucleotide-binding protein | polymer | 316 | 35149.6 | 1 | UniProt (G0S9U0) Pfam (PF00400) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 7 | G (B) | HABP4_PAI-RBP1 domain-containing protein | polymer | 302 | 32667.9 | 1 | UniProt (G0S428) Pfam (PF09598) Pfam (PF04774) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 8 | H (C) | Elongation factor 2 | polymer | 845 | 93786.5 | 1 | UniProt (G0S5T7) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679) Pfam (PF00009) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 9 | I (LA) | 60S ribosomal protein L2-like protein | polymer | 254 | 27598.9 | 1 | UniProt (G0S4P8) Pfam (PF00181) Pfam (PF03947) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 10 | J (LB) | 60S ribosomal protein L3-like protein | polymer | 392 | 44456.9 | 1 | UniProt (G0RXW1) Pfam (PF00297) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 11 | K (LC) | 60S ribosomal protein L4-like protein | polymer | 365 | 39439.9 | 1 | UniProt (G0SFC3) Pfam (PF00573) Pfam (PF14374) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 12 | L (LD) | 60S ribosomal protein l5-like protein | polymer | 304 | 35034.6 | 1 | UniProt (G0SEG2) Pfam (PF17144) Pfam (PF14204) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 13 | M (LE) | 60S ribosomal protein L6 | polymer | 200 | 22133.0 | 1 | UniProt (G0S0D6) Pfam (PF01159) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 14 | N (LF) | 60S ribosomal protein l7-like protein | polymer | 249 | 28821.8 | 1 | UniProt (G0SFL0) Pfam (PF08079) Pfam (PF00327) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 15 | O (LG) | 60S ribosomal protein L8 | polymer | 262 | 29744.5 | 1 | UniProt (G0SAJ9) Pfam (PF01248) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 16 | P (LH) | 60S ribosomal protein l9-like protein | polymer | 229 | 25882.0 | 1 | UniProt (G0S0E5) Pfam (PF00347) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 17 | Q (LI) | 60S ribosomal protein L10-like protein | polymer | 219 | 25255.4 | 1 | UniProt (G0SEI1) Pfam (PF00252) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 18 | R (LJ) | Putative ribosomal protein | polymer | 173 | 20119.3 | 1 | UniProt (G0SHQ2) Pfam (PF00281) Pfam (PF00673) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 19 | S (LK) | 60S ribosomal protein L12-like protein | polymer | 165 | 17802.7 | 1 | UniProt (G0SGH8) Pfam (PF03946) Pfam (PF00298) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 20 | T (LL) | 60S ribosomal protein L13 | polymer | 213 | 24191.2 | 1 | UniProt (G0S992) Pfam (PF01294) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 21 | U (LM) | 60S ribosomal protein L14-like protein | polymer | 142 | 16111.9 | 1 | UniProt (G0S1R0) Pfam (PF01929) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 22 | V (LN) | Ribosomal protein L15 | polymer | 203 | 24307.3 | 1 | UniProt (G0RZ88) Pfam (PF00827) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 23 | W (LO) | 60S ribosomal protein L16-like protein | polymer | 204 | 22993.2 | 1 | UniProt (G0SH61) Pfam (PF00572) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 24 | X (LP) | 60S ribosomal protein l17-like protein | polymer | 187 | 21072.2 | 1 | UniProt (G0SGY1) Pfam (PF00237) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 25 | Y (LQ) | Ribosomal protein L18-like protein | polymer | 213 | 24195.5 | 1 | UniProt (G0S9B5) Pfam (PF17135) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 26 | Z (LR) | Ribosomal protein L19 | polymer | 192 | 22409.2 | 1 | UniProt (G0S9T3) Pfam (PF01280) Pfam (PF25476) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 27 | AA (LS) | 60S ribosomal protein L20 | polymer | 174 | 20341.9 | 1 | UniProt (G0SCE2) Pfam (PF01775) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 28 | BA (LT) | 60S ribosomal protein l21-like protein | polymer | 160 | 18159.2 | 1 | UniProt (G0S0Z3) Pfam (PF01157) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 29 | CA (LU) | 60S ribosomal protein L22-like protein | polymer | 127 | 14302.6 | 1 | UniProt (G0SDS8) Pfam (PF01776) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 30 | DA (LV) | 60S ribosomal protein l23-like protein | polymer | 139 | 14674.4 | 1 | UniProt (G0SI44) Pfam (PF00238) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 31 | EA (LW) | 60S ribosomal protein L24-like protein | polymer | 205 | 23087.8 | 1 | UniProt (G0S1P9) Pfam (PF01246) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 32 | FA (LX) | 60S ribosomal protein L25-like protein | polymer | 156 | 17175.3 | 1 | UniProt (G0S507) Pfam (PF03939) Pfam (PF00276) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 33 | GA (LY) | 60S ribosomal protein L26-like protein | polymer | 138 | 15565.3 | 1 | UniProt (G0RYN9) Pfam (PF16906) Pfam (PF00467) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 34 | HA (LZ) | 60S ribosomal protein L27 | polymer | 135 | 15803.7 | 1 | UniProt (G0RZE9) Pfam (PF01777) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 35 | IA (La) | 60S ribosomal protein L28-like protein | polymer | 149 | 16848.5 | 1 | Chaetomium thermophilum var. thermophilum DSM 1495 | ||
| 36 | JA (Lb) | 60S ribosomal protein L29 | polymer | 65 | 7529.7 | 1 | UniProt (Q2H9W4) Pfam (PF01779) | Chaetomium thermophilum var. thermophilum DSM 1495 | Ribosomal protein eL29 |
| 37 | KA (Lc) | 60S ribosomal protein l30-like protein | polymer | 108 | 11602.6 | 1 | UniProt (G0SEI0) Pfam (PF01248) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 38 | LA (Ld) | Putative 60S ribosomal protein | polymer | 120 | 13872.2 | 1 | UniProt (G0SD68) Pfam (PF01198) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 39 | MA (Le) | 60S ribosomal protein L32-like protein | polymer | 131 | 15096.0 | 1 | UniProt (G0S6V4) Pfam (PF01655) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 40 | NA (Lf) | 60S ribosomal protein l33-like protein | polymer | 109 | 12330.3 | 1 | UniProt (G0SCL3) Pfam (PF01247) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 41 | OA (Lg) | Ribosomal protein l34-like protein | polymer | 119 | 13493.0 | 1 | UniProt (G0SFN0) Pfam (PF01199) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 42 | PA (Lh) | Dolichyl-diphosphooligosaccharide--protein glycotransferase | polymer | 126 | 14643.4 | 1 | UniProt (G0S0D7) Pfam (PF00831) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 43 | QA (Li) | 60S ribosomal protein L36 | polymer | 110 | 12784.1 | 1 | UniProt (G0SBN1) Pfam (PF01158) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 44 | RA (Lj) | Ribosomal protein L37 | polymer | 95 | 10660.5 | 1 | UniProt (G0S101) Pfam (PF01907) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 45 | SA (Lk) | 60S ribosomal protein L38-like protein | polymer | 94 | 10902.0 | 1 | UniProt (G0SG89) Pfam (PF01781) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 46 | TA (Ll) | Ribosomal protein eL39 | polymer | 51 | 6297.5 | 1 | UniProt (Q2H9R2) Pfam (PF00832) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 47 | UA (Lm) | Ubiquitin | polymer | 127 | 14481.1 | 1 | UniProt (G0S8G4) Pfam (PF00240) Pfam (PF01020) | Chaetomium thermophilum var. thermophilum DSM 1495 | Ribosomal protein eL40 |
| 48 | VA, ZA (Ln, Lr) | 60S ribosomal protein L41-A | polymer | 25 | 3354.2 | 2 | UniProt (P0CX86) Pfam (PF05162) | Chaetomium thermophilum var. thermophilum DSM 1495 | Ribosomal protein eL41 |
| 49 | WA (Lo) | 60S ribosomal protein L44-like protein | polymer | 106 | 12045.5 | 1 | UniProt (G0SBZ6) Pfam (PF00935) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 50 | XA (Lp) | 60S ribosomal protein L43-like protein | polymer | 92 | 10159.0 | 1 | UniProt (G0S6B0) Pfam (PF01780) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 51 | YA (Lq) | Putative 60S ribosomal protein | polymer | 147 | 15960.5 | 1 | UniProt (G0SHJ6) Pfam (PF01778) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 52 | AB (Ls) | 60S acidic ribosomal protein P0 | polymer | 312 | 33853.6 | 1 | UniProt (G0SGP3) Pfam (PF00466) Pfam (PF17777) Pfam (PF00428) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 53 | BB (SA) | 40S ribosomal protein S0 | polymer | 285 | 31159.0 | 1 | UniProt (G0RYF9) Pfam (PF00318) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 54 | CB (SB) | 40S ribosomal protein S1 | polymer | 255 | 29245.2 | 1 | UniProt (G0S7T8) Pfam (PF01015) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 55 | DB (SC) | 40S ribosomal protein S2-like protein | polymer | 263 | 28556.1 | 1 | UniProt (G0SAV4) Pfam (PF00333) Pfam (PF03719) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 56 | EB (SD) | 40S ribosomal protein S3-like protein | polymer | 254 | 27893.0 | 1 | UniProt (G0S6I7) Pfam (PF07650) Pfam (PF00189) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 57 | FB (SE) | 40S ribosomal protein S4 | polymer | 264 | 29800.8 | 1 | UniProt (G0S1A6) Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 58 | GB (SF) | 40S ribosomal protein s5-like protein | polymer | 212 | 23679.2 | 1 | UniProt (G0S1Z0) Pfam (PF00177) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 59 | HB (SG) | 40S ribosomal protein S6 | polymer | 239 | 27490.1 | 1 | UniProt (G0RY43) Pfam (PF01092) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 60 | IB (SH) | 40S ribosomal protein S7 | polymer | 203 | 23084.7 | 1 | UniProt (G0S8C4) Pfam (PF01251) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 61 | JB (SI) | 40S ribosomal protein S8 | polymer | 202 | 23102.4 | 1 | UniProt (G0RY45) Pfam (PF01201) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 62 | KB (SJ) | 40S ribosomal protein s9-like protein | polymer | 190 | 22029.8 | 1 | UniProt (G0S0Z4) Pfam (PF00163) Pfam (PF01479) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 63 | LB (SK) | 40S ribosomal protein s10-like protein | polymer | 159 | 18121.5 | 1 | UniProt (G0RZD8) Pfam (PF03501) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 64 | MB (SL) | 40S ribosomal protein S11-like protein | polymer | 161 | 18698.2 | 1 | UniProt (G0SF00) Pfam (PF16205) Pfam (PF00366) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 65 | NB (SM) | 40S ribosomal protein S12 | polymer | 144 | 15961.3 | 1 | UniProt (G0SHH9) Pfam (PF01248) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 66 | OB (SN) | 40S ribosomal protein S13-like protein | polymer | 151 | 16912.9 | 1 | UniProt (G0RZM9) Pfam (PF08069) Pfam (PF00312) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 67 | PB (SO) | 40S ribosomal protein S14-like protein | polymer | 150 | 16071.5 | 1 | UniProt (G0SFL1) Pfam (PF00411) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 68 | QB (SP) | 40S ribosomal protein s15-like protein | polymer | 153 | 17601.6 | 1 | UniProt (G0S084) Pfam (PF00203) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 69 | RB (SQ) | 40S ribosomal protein S16-like protein | polymer | 143 | 15962.8 | 1 | UniProt (G0SBR7) Pfam (PF00380) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 70 | SB (SR) | 40S ribosomal protein S17-like protein | polymer | 143 | 16720.2 | 1 | UniProt (G0S871) Pfam (PF00833) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 71 | TB (SS) | Putative ribosomal protein | polymer | 156 | 17826.7 | 1 | UniProt (G0S6J7) Pfam (PF00416) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 72 | UB (ST) | 40S ribosomal protein S19-like protein | polymer | 153 | 17151.3 | 1 | UniProt (G0SFK8) Pfam (PF01090) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 73 | VB (SU) | 40S ribosomal protein S20-like protein | polymer | 116 | 13212.6 | 1 | UniProt (G0S379) Pfam (PF00338) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 74 | WB (SV) | 40S ribosomal protein S21-like protein | polymer | 98 | 10961.5 | 1 | UniProt (G0SI21) Pfam (PF01249) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 75 | XB (SW) | 40S ribosomal protein S22-like protein | polymer | 130 | 14905.5 | 1 | UniProt (G0SHI0) Pfam (PF00410) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 76 | YB (SX) | 40S ribosomal protein s23-like protein | polymer | 145 | 15934.7 | 1 | UniProt (G0RY17) Pfam (PF00164) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 77 | ZB (SY) | 40S ribosomal protein S24 | polymer | 136 | 15535.3 | 1 | UniProt (P0CU28) Pfam (PF01282) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 78 | AC (SZ) | 40S ribosomal protein S25 | polymer | 99 | 10932.9 | 1 | UniProt (G0S1Y9) Pfam (PF03297) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 79 | BC (Sa) | 40S ribosomal protein S26 | polymer | 119 | 13616.2 | 1 | UniProt (G0S2X4) Pfam (PF01283) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 80 | CC (Sb) | Ribosomal protein s27-like protein | polymer | 82 | 8923.6 | 1 | UniProt (G0S1S4) Pfam (PF01667) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 81 | DC (Sc) | 40S ribosomal protein S28-like protein | polymer | 68 | 7742.0 | 1 | UniProt (G0S9M9) Pfam (PF01200) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 82 | EC (Sd) | Ribosomal protein uS14 | polymer | 56 | 6504.6 | 1 | UniProt (Q2HB68) Pfam (PF00253) | Chaetomium thermophilum var. thermophilum DSM 1495 | |
| 83 | FC (Se) | 40S ribosomal protein S30 | polymer | 62 | 6910.3 | 1 | UniProt (Q2H4C5) Pfam (PF04758) | Chaetomium thermophilum var. thermophilum DSM 1495 | Ribosomal protein eS30 |
| 84 | GC (Sf) | 40S ribosomal protein S27a-like protein | polymer | 154 | 17731.8 | 1 | UniProt (G0S2X5) Pfam (PF00240) Pfam (PF01599) | Chaetomium thermophilum var. thermophilum DSM 1495 | Ribosomal protein eS31 |
| 85 | HC, IC, KC (1, C) | MAGNESIUM ION | non-polymer | 24.3 | 3 | Chemie (MG) PubChem (888) | |||
| 86 | JC (C) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) PubChem (136073927) PubChem (135398619) PubChem (135402030) PubChem (135431654) PubChem (135566337) PubChem (135760556) PubChem (136026707) PubChem (136053418) PubChem (136663964) PubChem (136664748) PubChem (136759848) PubChem (136759849) PubChem (136759850) PubChem (136836636) PubChem (136847074) PubChem (172898537) | |||
| 87 | LC, MC, NC, OC, PC... (Lg, Lj, Lm, Lo, Lp...) | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) |
Sequence modifications
Lm: 3 - 128 (UniProt: G0S8G4)
| PDB | External Database | Details |
|---|---|---|
| Met 2 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 85 |
| Total formula weight | 3361883.1 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 1039.4 | |
| All* | Total formula weight | 3362922.5 |
