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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7OJ0

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A16S rRNApolymer1519492591.11Escherichia coli K-12
2B30S ribosomal protein S2polymer24126781.71UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS2
3C30S ribosomal protein S3polymer23326031.31UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS3
4D30S ribosomal protein S4polymer20623514.21UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS4
5E30S ribosomal protein S5polymer16717629.41UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS5
6F30S ribosomal protein S6, fully modified isoformpolymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli (strain K12)
7G30S ribosomal protein S7polymer17920055.21UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS7
8H30S ribosomal protein S8polymer13014146.61UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS8
9I30S ribosomal protein S9polymer13014886.31UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS9
10J30S ribosomal protein S10polymer10311755.61UniProt (A0A6D2XQX6)
Pfam (PF00338)
UniProt (by SIFTS) (P0A7R5)
In PDB		Escherichia coli (strain K12)
11K30S ribosomal protein S11polymer12913872.01UniProt (A0A6D2X4T2)
Pfam (PF00411)
UniProt (by SIFTS) (P0A7R9)
In PDB		Escherichia coli (strain K12)
12L30S ribosomal protein S12polymer12413768.21UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS12
13M30S ribosomal protein S13polymer11813128.51UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS13
14N30S ribosomal protein S14polymer10111606.61UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS14
15O30S ribosomal protein S15polymer8910290.81UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS15
16P30S ribosomal protein S16polymer829207.61UniProt (A0A6D2XXS6)
Pfam (PF00886)
UniProt (by SIFTS) (P0A7T3)
In PDB		Escherichia coli (strain K12)
17Q30S ribosomal protein S17polymer849724.51UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS17
18R30S ribosomal protein S18polymer759005.51UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein bS18
19S30S ribosomal protein S19polymer9210455.41UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS19
20T30S ribosomal protein S20polymer879708.51UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein bS20
21U30S ribosomal protein S21polymer718524.01UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein bS21
22a23S rRNApolymer2807910510.81Escherichia coli K-12
23b5S rRNApolymer11938483.91GenBank (1373146531)Escherichia coli K-12
24c50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL2
25d50S ribosomal protein L3polymer20922291.61UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL3
26e50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL4
27f50S ribosomal protein L5polymer17920333.61UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL5
28g50S ribosomal protein L6polymer17718932.81UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL6
29h50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL9
30i50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL13
31j50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL14
32k50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL15
33l50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL16
34m50S ribosomal protein L17polymer12714393.71UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL17
35n50S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL18
36o50S ribosomal protein L19polymer11513159.31UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL19
37p50S ribosomal protein L20polymer11813528.01UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL20
38q50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL21
39r50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL22
40s50S ribosomal protein L23polymer10011222.21UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL23
41t50S ribosomal protein L24polymer10411339.31UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL24
42u50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL25
43v50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL27
44w50S ribosomal protein L28polymer789027.61UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL28
45x50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL29
46y50S ribosomal protein L30polymer596554.81UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL30
47z50S ribosomal protein L32polymer576463.41UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL32
48050S ribosomal protein L33polymer556388.61UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL33
49150S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL34
50250S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL35,Ribosomal protein A
51350S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL36-A,Ribosomal protein B
52450S ribosomal protein L31polymer667516.71UniProt (A0A4S5AQC9)
Pfam (PF01197)
UniProt (by SIFTS) (P0A7M9)
In PDB		Escherichia coli (strain K12)
53XmRNApolymer51522.01Escherichia coli K-12
547TnaCpolymer161974.21Pfam (PF08053)
UniProt (by SIFTS) (P0AD89)
In PDB		Escherichia coli K-12
55VtRNApolymer7524279.51Escherichia coli K-12
566Alternative ribosome-rescue factor Apolymer465396.31UniProt (A0A6D2VUC8)
Pfam (PF03889)
UniProt (by SIFTS) (P36675)
In PDB		Escherichia coli (strain K12)
578Peptide chain release factor RF2polymer36541300.71UniProt (P07012)
Pfam (PF00472)
Pfam (PF03462)
In PDB		Escherichia coli (strain K12)RF-2
58550S ribosomal protein L10polymer13013981.11UniProt (P0A7J3)
Pfam (PF00466)
In PDB		Escherichia coli K-1250S ribosomal protein L8,Large ribosomal subunit protein uL10
59950S ribosomal protein L11polymer13413962.31UniProt (A0A6D2WKM1)
Pfam (PF03946)
Pfam (PF00298)
UniProt (by SIFTS) (P0A7J7)
In PDB		Escherichia coli (strain K12)
60A, a, b, c, VMAGNESIUM IONnon-polymer24.3308Chemie (MG)
61aTRYPTOPHANnon-polymer204.21Chemie (TRP)
623, 4ZINC IONnon-polymer65.42Chemie (ZN)
Sequence modifications
K: 1 - 129 (UniProt: A0A6D2X4T2)
PDBExternal DatabaseDetails
Asp 119Asn 119conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains59
Total formula weight2203611.7
Non-Polymers*Number of molecules311
Total formula weight7821.0
All*Total formula weight2211432.7
*Water molecules are not included.

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PDB entries from 2024-07-17

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