7OIC
Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S rRNA | polymer | 1559 | 500043.6 | 1 | Homo sapiens | ||
| 2 | B (B) | mitochondrial Val tRNA | polymer | 69 | 22022.1 | 1 | GenBank (1485738021) | Homo sapiens (human) | |
| 3 | C (D) | Large ribosomal subunit protein uL2m | polymer | 305 | 33355.9 | 1 | UniProt (Q5T653) Pfam (PF00181) Pfam (PF03947) | Homo sapiens (human) | |
| 4 | D (E) | Large ribosomal subunit protein uL3m | polymer | 348 | 38689.6 | 1 | UniProt (P09001) Pfam (PF00297) | Homo sapiens (human) | |
| 5 | E (F) | Large ribosomal subunit protein uL4m | polymer | 311 | 34970.2 | 1 | UniProt (Q9BYD3) Pfam (PF00573) | Homo sapiens (human) | |
| 6 | F (H) | Large ribosomal subunit protein bL9m | polymer | 267 | 30296.4 | 1 | UniProt (Q9BYD2) Pfam (PF25131) Pfam (PF01281) Pfam (PF22078) | Homo sapiens (human) | |
| 7 | G (I) | Large ribosomal subunit protein uL10m | polymer | 261 | 29322.5 | 1 | UniProt (Q7Z7H8) Pfam (PF00466) | Homo sapiens (human) | |
| 8 | H (J) | Large ribosomal subunit protein uL11m | polymer | 192 | 20716.2 | 1 | UniProt (Q9Y3B7) Pfam (PF03946) Pfam (PF00298) | Homo sapiens (human) | |
| 9 | I (K) | Large ribosomal subunit protein uL13m | polymer | 178 | 20723.0 | 1 | UniProt (Q9BYD1) Pfam (PF00572) | Homo sapiens (human) | |
| 10 | J (L) | Large ribosomal subunit protein uL14m | polymer | 145 | 15973.7 | 1 | UniProt (Q6P1L8) Pfam (PF00238) | Homo sapiens (human) | |
| 11 | K (M) | Large ribosomal subunit protein uL15m | polymer | 296 | 33473.8 | 1 | UniProt (Q9P015) Pfam (PF00828) | Homo sapiens (human) | |
| 12 | L (N) | Large ribosomal subunit protein uL16m | polymer | 251 | 28496.3 | 1 | UniProt (Q9NX20) Pfam (PF00252) | Homo sapiens (human) | |
| 13 | M (O) | Large ribosomal subunit protein bL17m | polymer | 175 | 20083.3 | 1 | UniProt (Q9NRX2) Pfam (PF01196) | Homo sapiens (human) | |
| 14 | N (P) | Large ribosomal subunit protein uL18m | polymer | 180 | 20607.6 | 1 | UniProt (Q9H0U6) Pfam (PF00861) | Homo sapiens (human) | |
| 15 | O (Q) | Large ribosomal subunit protein bL19m | polymer | 292 | 33585.0 | 1 | UniProt (P49406) Pfam (PF01245) | Homo sapiens (human) | |
| 16 | P (R) | Large ribosomal subunit protein bL20m | polymer | 149 | 17479.7 | 1 | UniProt (Q9BYC9) Pfam (PF00453) | Homo sapiens (human) | |
| 17 | Q (S) | Large ribosomal subunit protein bL21m | polymer | 205 | 22847.7 | 1 | UniProt (Q7Z2W9) Pfam (PF00829) | Homo sapiens (human) | |
| 18 | R (T) | Large ribosomal subunit protein uL22m | polymer | 206 | 23683.7 | 1 | UniProt (Q9NWU5) Pfam (PF00237) | Homo sapiens (human) | |
| 19 | S (U) | Large ribosomal subunit protein uL23m | polymer | 153 | 17807.2 | 1 | UniProt (Q16540) Pfam (PF00276) | Homo sapiens (human) | |
| 20 | T (V) | Large ribosomal subunit protein uL24m | polymer | 216 | 24953.9 | 1 | UniProt (Q96A35) Pfam (PF00467) Pfam (PF17136) | Homo sapiens (human) | |
| 21 | U (W) | Large ribosomal subunit protein bL27m | polymer | 148 | 16102.9 | 1 | UniProt (Q9P0M9) Pfam (PF01016) | Homo sapiens (human) | |
| 22 | V (X) | Large ribosomal subunit protein bL28m | polymer | 256 | 30090.7 | 1 | UniProt (Q13084) Pfam (PF00830) | Homo sapiens (human) | |
| 23 | W (Y) | Large ribosomal subunit protein uL29m | polymer | 250 | 29508.5 | 1 | UniProt (Q9HD33) Pfam (PF06984) | Homo sapiens (human) | |
| 24 | X (Z) | Large ribosomal subunit protein uL30m | polymer | 161 | 18582.8 | 1 | UniProt (Q8TCC3) Pfam (PF00327) | Homo sapiens (human) | |
| 25 | Y (0) | Large ribosomal subunit protein bL32m | polymer | 188 | 21437.8 | 1 | UniProt (Q9BYC8) Pfam (PF01783) | Homo sapiens (human) | |
| 26 | Z (1) | Large ribosomal subunit protein bL33m | polymer | 65 | 7635.2 | 1 | UniProt (O75394) Pfam (PF00471) | Homo sapiens (human) | |
| 27 | AA (2) | Large ribosomal subunit protein bL34m | polymer | 92 | 10183.9 | 1 | UniProt (Q9BQ48) Pfam (PF00468) | Homo sapiens (human) | |
| 28 | BA (3) | Large ribosomal subunit protein bL35m | polymer | 188 | 21558.5 | 1 | UniProt (Q9NZE8) Pfam (PF01632) | Homo sapiens (human) | |
| 29 | CA (4) | Large ribosomal subunit protein bL36m | polymer | 103 | 11809.3 | 1 | UniProt (Q9P0J6) Pfam (PF00444) | Homo sapiens (human) | |
| 30 | DA (5) | Large ribosomal subunit protein mL37 | polymer | 423 | 48183.3 | 1 | UniProt (Q9BZE1) Pfam (PF07147) | Homo sapiens (human) | |
| 31 | EA (6) | Large ribosomal subunit protein mL38 | polymer | 380 | 44659.4 | 1 | UniProt (Q96DV4) Pfam (PF01161) | Homo sapiens (human) | |
| 32 | FA (7) | Large ribosomal subunit protein mL39 | polymer | 338 | 38764.8 | 1 | UniProt (Q9NYK5) | Homo sapiens (human) | |
| 33 | GA (8) | Large ribosomal subunit protein mL40 | polymer | 206 | 24534.4 | 1 | UniProt (Q9NQ50) Pfam (PF09812) | Homo sapiens (human) | |
| 34 | HA (9) | Large ribosomal subunit protein mL41 | polymer | 137 | 15404.7 | 1 | UniProt (Q8IXM3) Pfam (PF09809) | Homo sapiens (human) | |
| 35 | IA (a) | Large ribosomal subunit protein mL42 | polymer | 142 | 16691.2 | 1 | UniProt (Q9Y6G3) Pfam (PF10210) | Homo sapiens (human) | |
| 36 | JA (b) | Large ribosomal subunit protein mL43 | polymer | 215 | 23457.8 | 1 | UniProt (Q8N983) Pfam (PF05047) | Homo sapiens (human) | |
| 37 | KA (c) | Large ribosomal subunit protein mL44 | polymer | 332 | 37583.3 | 1 | UniProt (Q9H9J2) Pfam (PF22935) Pfam (PF22892) | Homo sapiens (human) | |
| 38 | LA (d) | 39S ribosomal protein L45, mitochondrial | polymer | 306 | 35402.9 | 1 | UniProt (Q9BRJ2) Pfam (PF04280) | Homo sapiens (human) | MRP-L45,Mitochondrial large ribosomal subunit protein mL45 |
| 39 | MA (e) | Large ribosomal subunit protein mL46 | polymer | 279 | 31748.1 | 1 | UniProt (Q9H2W6) Pfam (PF11788) | Homo sapiens (human) | |
| 40 | NA (f) | Large ribosomal subunit protein mL48 | polymer | 212 | 23970.8 | 1 | UniProt (Q96GC5) Pfam (PF00338) | Homo sapiens (human) | |
| 41 | OA (g) | Large ribosomal subunit protein mL49 | polymer | 166 | 19225.0 | 1 | UniProt (Q13405) Pfam (PF05046) | Homo sapiens (human) | |
| 42 | PA (h) | Large ribosomal subunit protein mL50 | polymer | 158 | 18349.9 | 1 | UniProt (Q8N5N7) Pfam (PF10501) | Homo sapiens (human) | |
| 43 | QA (i) | Large ribosomal subunit protein mL51 | polymer | 128 | 15125.9 | 1 | UniProt (Q4U2R6) Pfam (PF10244) | Homo sapiens (human) | |
| 44 | RA (j) | Large ribosomal subunit protein mL52 | polymer | 123 | 13682.7 | 1 | UniProt (Q86TS9) Pfam (PF18699) | Homo sapiens (human) | |
| 45 | SA (k) | Large ribosomal subunit protein mL53 | polymer | 112 | 12125.9 | 1 | UniProt (Q96EL3) Pfam (PF10780) | Homo sapiens (human) | |
| 46 | TA (l) | Large ribosomal subunit protein mL54 | polymer | 138 | 15844.2 | 1 | UniProt (Q6P161) Pfam (PF08561) | Homo sapiens (human) | |
| 47 | UA (m) | Large ribosomal subunit protein mL55 | polymer | 128 | 15160.4 | 1 | UniProt (Q7Z7F7) Pfam (PF09776) | Homo sapiens (human) | |
| 48 | VA (o) | Large ribosomal subunit protein mL63 | polymer | 102 | 12292.3 | 1 | UniProt (Q9BQC6) Pfam (PF14978) | Homo sapiens (human) | |
| 49 | WA (p) | Large ribosomal subunit protein mL62 | polymer | 206 | 23674.2 | 1 | UniProt (Q14197) Pfam (PF00472) | Homo sapiens (human) | |
| 50 | XA (q) | Large ribosomal subunit protein mL64 | polymer | 222 | 25426.9 | 1 | UniProt (Q8TAE8) Pfam (PF10147) | Homo sapiens (human) | |
| 51 | YA (r) | Large ribosomal subunit protein mL66 | polymer | 196 | 22224.1 | 1 | UniProt (Q9NVS2) Pfam (PF01084) | Homo sapiens (human) | |
| 52 | ZA (s) | Large ribosomal subunit protein mL65 | polymer | 439 | 50429.6 | 1 | UniProt (Q9NP92) Pfam (PF07147) | Homo sapiens (human) | |
| 53 | AB (u) | Mitochondrial assembly of ribosomal large subunit protein 1 | polymer | 234 | 26203.1 | 1 | UniProt (Q96EH3) Pfam (PF02410) | Homo sapiens (human) | |
| 54 | BB (v) | MIEF1 upstream open reading frame protein | polymer | 70 | 8460.8 | 1 | UniProt (L0R8F8) Pfam (PF05347) | Homo sapiens (human) | |
| 55 | CB (w) | Acyl carrier protein, mitochondrial | polymer | 156 | 17434.3 | 1 | UniProt (O14561) Pfam (PF00550) | Homo sapiens (human) | |
| 56 | DB (x) | 5-cytosine rRNA methyltransferase NSUN4 | polymer | 384 | 43187.4 | 1 | UniProt (Q96CB9) Pfam (PF01189) | Homo sapiens (human) | |
| 57 | EB (y) | Transcription termination factor 4, mitochondrial | polymer | 381 | 44012.5 | 1 | UniProt (Q7Z6M4) Pfam (PF02536) | Homo sapiens (human) | |
| 58 | FB (C) | RNA pCpA | polymer | 2 | 589.4 | 1 | Homo sapiens | ||
| 59 | AC, AD, AE, BC, BD... (A, F, M, W, g) | MAGNESIUM ION | non-polymer | 24.3 | 76 | Chemie (MG) PubChem (888) | |||
| 60 | BE, EE, FE (I, 0, 4) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) | |||
| 61 | HE (v) | 4'-PHOSPHOPANTETHEINE | non-polymer | 358.3 | 1 | Chemie (PNS) PubChem (987) PubChem (115254) PubChem (449063) | |||
| 62 | IE (x) | S-ADENOSYLMETHIONINE | non-polymer | 398.4 | 1 | Chemie (SAM) PubChem (5136) PubChem (34755) PubChem (58633578) PubChem (60038769) PubChem (73897310) PubChem (58766358) PubChem (87224684) PubChem (131697735) PubChem (9865603) PubChem (145712080) PubChem (12312798) PubChem (132988922) PubChem (134692588) PubChem (135030730) PubChem (140459785) PubChem (163046094) |
Sequence modifications
X: 1 - 256 (UniProt: Q13084)
| PDB | External Database | Details |
|---|---|---|
| Ala 148 | Thr 148 | conflict |
| Ser 149 | Pro 149 | conflict |
| Gly 150 | Lys 150 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 58 |
| Total formula weight | 1879890.2 | |
| Non-Polymers* | Number of molecules | 81 |
| Total formula weight | 2800.2 | |
| All* | Total formula weight | 1882690.4 |
