7OHT

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (1)	25S rRNA	polymer	3396	1097493.9	1		Saccharomyces cerevisiae S288C
2	B (2)	5.8S rRNA	polymer	158	50682.9	1		Saccharomyces cerevisiae S288C
3	C (3)	5S rRNA	polymer	121	38951.1	1	GenBank (834774822)	Saccharomyces cerevisiae S288c
4	D (B)	60S ribosomal protein L3	polymer	387	43850.8	1	UniProt (P14126) Pfam (PF00297)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
5	E (C)	60S ribosomal protein L4-A	polymer	362	39159.1	1	UniProt (P10664) Pfam (PF00573) Pfam (PF14374)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	L2,Large ribosomal subunit protein uL4-A,RP2,YL2
6	F (D)	60S ribosomal protein L5	polymer	297	33764.8	1	UniProt (P26321) Pfam (PF17144) Pfam (PF14204)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
7	G (E)	60S ribosomal protein L6-A	polymer	176	20000.6	1	UniProt (Q02326) Pfam (PF01159)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	L17,Large ribosomal subunit protein eL6-A,RP18,YL16
8	H (F)	60S ribosomal protein L7-A	polymer	244	27686.3	1	UniProt (P05737) Pfam (PF08079) Pfam (PF00327)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	L6,Large ribosomal subunit protein uL30-A,RP11,YL8
9	I (H)	60S ribosomal protein L9-A	polymer	191	21605.1	1	UniProt (P05738) Pfam (PF00347)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	L8,Large ribosomal subunit protein uL6-A,RP24,YL11
10	J (J)	60S ribosomal protein L11-A	polymer	174	19755.7	1	UniProt (P0C0W9) Pfam (PF00281) Pfam (PF00673)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	L16,Large ribosomal subunit protein uL5-A,RP39,YL22
11	K (M)	60S ribosomal protein L14-A	polymer	138	15195.1	1	UniProt (P36105) Pfam (PF00467) Pfam (PF01929)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	Large ribosomal subunit protein eL14-A
12	L (O)	60S ribosomal protein L16-A	polymer	199	22247.2	1	UniProt (P26784) Pfam (PF00572)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
13	M (Q)	60S ribosomal protein L18-A	polymer	186	20609.3	1	UniProt (P0CX49) Pfam (PF17135)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	Large ribosomal subunit protein eL18-A,RP28
14	N (S)	60S ribosomal protein L20-A	polymer	172	20478.9	1	UniProt (P0CX23) Pfam (PF01775)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	L18a,Large ribosomal subunit protein eL20-A
15	O (T)	60S ribosomal protein L21-A	polymer	160	18279.3	1	UniProt (Q02753) Pfam (PF01157)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	Large ribosomal subunit protein eL21-A
16	P (V)	60S ribosomal protein L23-A	polymer	137	14494.0	1	UniProt (P0CX41) Pfam (PF00238)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	L17a,Large ribosomal subunit protein uL14-A,YL32
17	Q (W)	Ribosome assembly factor MRT4	polymer	236	27098.0	1	UniProt (P33201) Pfam (PF00466) Pfam (PF17777)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	mRNA turnover protein 4
18	R (b)	Nucleolar GTP-binding protein 1	polymer	647	74531.2	1	UniProt (Q02892) Pfam (PF17835) Pfam (PF06858) Pfam (PF08155)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
19	S (e)	60S ribosomal protein L32	polymer	130	14809.4	1	UniProt (P38061) Pfam (PF01655)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	Large ribosomal subunit protein eL32
20	T (f)	60S ribosomal protein L33-A	polymer	107	12177.1	1	UniProt (P05744) Pfam (PF01247)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	L37,Large ribosomal subunit protein eL33-A,RP47,YL37
21	U (m)	Nucleolar GTP-binding protein 2	polymer	486	55585.6	1	UniProt (P53742) Pfam (PF08153) Pfam (PF01926)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
22	V (r)	Ribosome biogenesis protein NSA2	polymer	261	29786.8	1	UniProt (P40078) Pfam (PF01201)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	NOP7-associated protein 2
23	W (u)	Ribosome biogenesis protein RLP24	polymer	199	24027.7	1	UniProt (Q07915) Pfam (PF01246)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	Ribosomal protein L24-like
24	X (v)	Ribosome biogenesis protein RPF2	polymer	344	39665.8	1	UniProt (P36160) Pfam (PF04427)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
25	Y (w)	Regulator of ribosome biosynthesis	polymer	203	23001.4	1	UniProt (Q08746) Pfam (PF04939)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
26	Z (x)	Ribosome assembly protein 4	polymer	515	57106.8	1	UniProt (P25382) Pfam (PF08154) Pfam (PF00400)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	Notchless protein homolog 1,Ribosome biogenesis factor RSA4
27	AA (y)	Eukaryotic translation initiation factor 6	polymer	245	26476.6	1	UniProt (Q12522) Pfam (PF01912)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	eIF-6
28	BA, CA (b, m)	MAGNESIUM ION	non-polymer		24.3	2	Chemie (MG)
29	DA (u)	ZINC ION	non-polymer		65.4	1	Chemie (ZN)

Contents of the asymmetric unit

Polymers	Number of chains	27
	Total formula weight	1888520.3
Non-Polymers*	Number of molecules	3
	Total formula weight	114.0
All*	Total formula weight	1888634.3

*Water molecules are not included.