7OF2
Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | 39S ribosomal protein L32, mitochondrial | polymer | 188 | 21437.8 | 1 | UniProt (Q9BYC8) Pfam (PF01783) | Homo sapiens (Human) | MRP-L32,Mitochondrial large ribosomal subunit protein bL32m |
| 2 | B (1) | 39S ribosomal protein L33, mitochondrial | polymer | 65 | 7635.2 | 1 | UniProt (O75394) Pfam (PF00471) | Homo sapiens (Human) | MRP-L33,Mitochondrial large ribosomal subunit protein bL33m |
| 3 | C (2) | 39S ribosomal protein L34, mitochondrial | polymer | 92 | 10183.9 | 1 | UniProt (Q9BQ48) Pfam (PF00468) | Homo sapiens (Human) | MRP-L34,Mitochondrial large ribosomal subunit protein bL34m |
| 4 | D (3) | 39S ribosomal protein L35, mitochondrial | polymer | 188 | 21558.5 | 1 | UniProt (Q9NZE8) Pfam (PF01632) | Homo sapiens (Human) | MRP-L35,Mitochondrial large ribosomal subunit protein bL35m |
| 5 | E (4) | 39S ribosomal protein L36, mitochondrial | polymer | 103 | 11809.3 | 1 | UniProt (Q9P0J6) Pfam (PF00444) | Homo sapiens (Human) | MRP-L36,BRCA1-interacting protein 1,Mitochondrial large ribosomal subunit protein bL36m |
| 6 | F (5) | 39S ribosomal protein L37, mitochondrial | polymer | 423 | 48183.3 | 1 | UniProt (Q9BZE1) Pfam (PF07147) | Homo sapiens (Human) | MRP-L37,39S ribosomal protein L2,mitochondrial,MRP-L2,Mitochondrial large ribosomal subunit protein mL37 |
| 7 | G (6) | 39S ribosomal protein L38, mitochondrial | polymer | 380 | 44659.4 | 1 | UniProt (Q96DV4) Pfam (PF01161) | Homo sapiens (Human) | MRP-L38,Mitochondrial large ribosomal subunit protein mL38 |
| 8 | H (7) | 39S ribosomal protein L39, mitochondrial | polymer | 338 | 38764.8 | 1 | UniProt (Q9NYK5) | Homo sapiens (Human) | MRP-L39,39S ribosomal protein L5,mitochondrial,MRP-L5,Mitochondrial large ribosomal subunit protein mL39 |
| 9 | I (8) | 39S ribosomal protein L40, mitochondrial | polymer | 206 | 24534.4 | 1 | UniProt (Q9NQ50) Pfam (PF09812) | Homo sapiens (Human) | MRP-L40,Mitochondrial large ribosomal subunit protein mL40,Nuclear localization signal-containing protein deleted in velocardiofacial syndrome,Up-regulated in metastasis |
| 10 | J (9) | 39S ribosomal protein L41, mitochondrial | polymer | 137 | 15404.7 | 1 | UniProt (Q8IXM3) Pfam (PF09809) | Homo sapiens (Human) | MRP-L41,39S ribosomal protein L27 homolog,Bcl-2-interacting mitochondrial ribosomal protein L41,Cell proliferation-inducing gene 3 protein,MRP-L27 homolog,Mitochondrial large ribosomal subunit protein mL41 |
| 11 | K (A) | 16S ribosomal RNA | polymer | 1559 | 500061.7 | 1 | Homo sapiens | ||
| 12 | L (B) | mitochondrial tRNAVal | polymer | 69 | 22022.1 | 1 | GenBank (1485738021) | Homo sapiens | |
| 13 | M (C) | Putative GTP-binding protein 6 | polymer | 516 | 56984.4 | 1 | UniProt (O43824) Pfam (PF13167) Pfam (PF16360) Pfam (PF01926) | Homo sapiens (Human) | Pseudoautosomal GTP-binding protein-like |
| 14 | N (D) | 39S ribosomal protein L2, mitochondrial | polymer | 305 | 33355.9 | 1 | UniProt (Q5T653) Pfam (PF00181) Pfam (PF03947) | Homo sapiens (Human) | MRP-L2,Mitochondrial large ribosomal subunit protein uL2m |
| 15 | O (E) | 39S ribosomal protein L3, mitochondrial | polymer | 348 | 38689.6 | 1 | UniProt (P09001) Pfam (PF00297) | Homo sapiens (Human) | MRP-L3,Mitochondrial large ribosomal subunit protein uL3m |
| 16 | P (F) | 39S ribosomal protein L4, mitochondrial | polymer | 311 | 34970.2 | 1 | UniProt (Q9BYD3) Pfam (PF00573) | Homo sapiens (Human) | MRP-L4,Mitochondrial large ribosomal subunit protein uL4m |
| 17 | Q (H) | 39S ribosomal protein L9, mitochondrial | polymer | 267 | 30296.4 | 1 | UniProt (Q9BYD2) Pfam (PF25131) Pfam (PF01281) Pfam (PF22078) | Homo sapiens (Human) | MRP-L9,Mitochondrial large ribosomal subunit protein bL9m |
| 18 | R (I) | 39S ribosomal protein L10, mitochondrial | polymer | 261 | 29322.5 | 1 | UniProt (Q7Z7H8) Pfam (PF00466) | Homo sapiens (Human) | MRP-L10,39S ribosomal protein L8,mitochondrial,MRP-L8,Mitochondrial large ribosomal subunit protein uL10m |
| 19 | S (J) | 39S ribosomal protein L11, mitochondrial | polymer | 192 | 20716.2 | 1 | UniProt (Q9Y3B7) Pfam (PF03946) Pfam (PF00298) | Homo sapiens (Human) | MRP-L11,Mitochondrial large ribosomal subunit protein uL11m |
| 20 | T (K) | 39S ribosomal protein L13, mitochondrial | polymer | 178 | 20723.0 | 1 | UniProt (Q9BYD1) Pfam (PF00572) | Homo sapiens (Human) | MRP-L13,Mitochondrial large ribosomal subunit protein uL13m |
| 21 | U (L) | 39S ribosomal protein L14, mitochondrial | polymer | 145 | 15973.7 | 1 | UniProt (Q6P1L8) Pfam (PF00238) | Homo sapiens (Human) | MRP-L14,39S ribosomal protein L32,mitochondrial,MRP-L32,Mitochondrial large ribosomal subunit protein uL14m |
| 22 | V (M) | 39S ribosomal protein L15, mitochondrial | polymer | 296 | 33473.8 | 1 | UniProt (Q9P015) Pfam (PF00828) | Homo sapiens (Human) | MRP-L15,Mitochondrial large ribosomal subunit protein uL15m |
| 23 | W (N) | 39S ribosomal protein L16, mitochondrial | polymer | 251 | 28496.3 | 1 | UniProt (Q9NX20) Pfam (PF00252) | Homo sapiens (Human) | MRP-L16,Mitochondrial large ribosomal subunit protein uL16m |
| 24 | X (O) | 39S ribosomal protein L17, mitochondrial | polymer | 175 | 20083.3 | 1 | UniProt (Q9NRX2) Pfam (PF01196) | Homo sapiens (Human) | MRP-L17,LYST-interacting protein 2,Mitochondrial large ribosomal subunit protein bL17m |
| 25 | Y (P) | 39S ribosomal protein L18, mitochondrial | polymer | 180 | 20607.6 | 1 | UniProt (Q9H0U6) Pfam (PF00861) | Homo sapiens (Human) | MRP-L18,Mitochondrial large ribosomal subunit protein uL18m |
| 26 | Z (Q) | 39S ribosomal protein L19, mitochondrial | polymer | 292 | 33585.0 | 1 | UniProt (P49406) Pfam (PF01245) | Homo sapiens (Human) | MRP-L19,39S ribosomal protein L15,mitochondrial,MRP-L15,Mitochondrial large ribosomal subunit protein bL19m |
| 27 | AA (R) | 39S ribosomal protein L20, mitochondrial | polymer | 149 | 17479.7 | 1 | UniProt (Q9BYC9) Pfam (PF00453) | Homo sapiens (Human) | MRP-L20,Mitochondrial large ribosomal subunit protein bL20m |
| 28 | BA (S) | 39S ribosomal protein L21, mitochondrial | polymer | 205 | 22847.7 | 1 | UniProt (Q7Z2W9) Pfam (PF00829) | Homo sapiens (Human) | MRP-L21,Mitochondrial large ribosomal subunit protein bL21m |
| 29 | CA (T) | 39S ribosomal protein L22, mitochondrial | polymer | 206 | 23683.7 | 1 | UniProt (Q9NWU5) Pfam (PF00237) | Homo sapiens (Human) | MRP-L22,39S ribosomal protein L25,mitochondrial,MRP-L25,Mitochondrial large ribosomal subunit protein uL22m |
| 30 | DA (U) | 39S ribosomal protein L23, mitochondrial | polymer | 153 | 17807.2 | 1 | UniProt (Q16540) Pfam (PF00276) | Homo sapiens (Human) | MRP-L23,L23 mitochondrial-related protein,Mitochondrial large ribosomal subunit protein uL23m,Ribosomal protein L23-like |
| 31 | EA (V) | 39S ribosomal protein L24, mitochondrial | polymer | 216 | 24953.9 | 1 | UniProt (Q96A35) Pfam (PF00467) Pfam (PF17136) | Homo sapiens (Human) | MRP-L24,Mitochondrial large ribosomal subunit protein uL24m |
| 32 | FA (W) | 39S ribosomal protein L27, mitochondrial | polymer | 148 | 16102.9 | 1 | UniProt (Q9P0M9) Pfam (PF01016) | Homo sapiens (Human) | MRP-L27,Mitochondrial large ribosomal subunit protein bL27m |
| 33 | GA (X) | 39S ribosomal protein L28, mitochondrial | polymer | 256 | 30202.9 | 1 | UniProt (Q13084) Pfam (PF00830) | Homo sapiens (Human) | MRP-L28,Melanoma antigen p15,Melanoma-associated antigen recognized by T-lymphocytes,Mitochondrial large ribosomal subunit protein bL28m |
| 34 | HA (Y) | 39S ribosomal protein L47, mitochondrial | polymer | 250 | 29508.5 | 1 | UniProt (Q9HD33) Pfam (PF06984) | Homo sapiens (Human) | MRP-L47,Mitochondrial large ribosomal subunit protein uL29m,Nasopharyngeal carcinoma metastasis-related protein 1 |
| 35 | IA (Z) | 39S ribosomal protein L30, mitochondrial | polymer | 161 | 18582.8 | 1 | UniProt (Q8TCC3) Pfam (PF00327) | Homo sapiens (Human) | MRP-L30,39S ribosomal protein L28,mitochondrial,MRP-L28,Mitochondrial large ribosomal subunit protein uL30m |
| 36 | JA (a) | 39S ribosomal protein L42, mitochondrial | polymer | 142 | 16691.2 | 1 | UniProt (Q9Y6G3) Pfam (PF10210) | Homo sapiens (Human) | MRP-L42,39S ribosomal protein L31,mitochondrial,MRP-L31,Mitochondrial large ribosomal subunit protein mL42 |
| 37 | KA (b) | 39S ribosomal protein L43, mitochondrial | polymer | 215 | 23457.8 | 1 | UniProt (Q8N983) Pfam (PF05047) | Homo sapiens (Human) | MRP-L43,Mitochondrial large ribosomal subunit protein mL43,Mitochondrial ribosomal protein bMRP36a |
| 38 | LA (c) | 39S ribosomal protein L44, mitochondrial | polymer | 332 | 37583.3 | 1 | UniProt (Q9H9J2) Pfam (PF22935) Pfam (PF22892) | Homo sapiens (Human) | MRP-L44,Mitochondrial large ribosomal subunit protein mL44 |
| 39 | MA (d) | 39S ribosomal protein L45, mitochondrial | polymer | 306 | 35402.9 | 1 | UniProt (Q9BRJ2) Pfam (PF04280) | Homo sapiens (Human) | MRP-L45,Mitochondrial large ribosomal subunit protein mL45 |
| 40 | NA (e) | 39S ribosomal protein L46, mitochondrial | polymer | 279 | 31748.1 | 1 | UniProt (Q9H2W6) Pfam (PF11788) | Homo sapiens (Human) | MRP-L46,Mitochondrial large ribosomal subunit protein mL46,P2ECSL |
| 41 | OA (f) | 39S ribosomal protein L48, mitochondrial | polymer | 212 | 23970.8 | 1 | UniProt (Q96GC5) Pfam (PF00338) | Homo sapiens (Human) | MRP-L48,Mitochondrial large ribosomal subunit protein mL48 |
| 42 | PA (g) | 39S ribosomal protein L49, mitochondrial | polymer | 166 | 19225.0 | 1 | UniProt (Q13405) Pfam (PF05046) | Homo sapiens (Human) | MRP-L49,Mitochondrial large ribosomal subunit protein mL49,Neighbor of FAU,NOF,Protein NOF1 |
| 43 | QA (h) | 39S ribosomal protein L50, mitochondrial | polymer | 158 | 18349.9 | 1 | UniProt (Q8N5N7) Pfam (PF10501) | Homo sapiens (Human) | MRP-L50,Mitochondrial large ribosomal subunit protein mL50 |
| 44 | RA (i) | 39S ribosomal protein L51, mitochondrial | polymer | 128 | 15125.9 | 1 | UniProt (Q4U2R6) Pfam (PF10244) | Homo sapiens (Human) | MRP-L51,Mitochondrial large ribosomal subunit protein mL51,bMRP-64,bMRP64 |
| 45 | SA (j) | 39S ribosomal protein L52, mitochondrial | polymer | 123 | 13682.7 | 1 | UniProt (Q86TS9) Pfam (PF18699) | Homo sapiens (Human) | MRP-L52,Mitochondrial large ribosomal subunit protein mL52 |
| 46 | TA (k) | 39S ribosomal protein L53, mitochondrial | polymer | 112 | 12125.9 | 1 | UniProt (Q96EL3) Pfam (PF10780) | Homo sapiens (Human) | MRP-L53,Mitochondrial large ribosomal subunit protein mL53 |
| 47 | UA (l) | 39S ribosomal protein L54, mitochondrial | polymer | 138 | 15844.2 | 1 | UniProt (Q6P161) Pfam (PF08561) | Homo sapiens (Human) | MRP-L54,Mitochondrial large ribosomal subunit protein mL54 |
| 48 | VA (m) | 39S ribosomal protein L55, mitochondrial | polymer | 128 | 15160.4 | 1 | UniProt (Q7Z7F7) Pfam (PF09776) | Homo sapiens (Human) | MRP-L55,Mitochondrial large ribosomal subunit protein bL31m,Mitochondrial large ribosomal subunit protein mL55 |
| 49 | WA (o) | Ribosomal protein 63, mitochondrial | polymer | 102 | 12292.3 | 1 | UniProt (Q9BQC6) Pfam (PF14978) | Homo sapiens (Human) | hMRP63,Mitochondrial large ribosomal subunit protein mL63,Mitochondrial ribosomal protein 63,Mitochondrial ribosomal protein L57 |
| 50 | XA (p) | Peptidyl-tRNA hydrolase ICT1, mitochondrial | polymer | 206 | 23674.2 | 1 | UniProt (Q14197) Pfam (PF00472) | Homo sapiens (Human) | 39S ribosomal protein L58,mitochondrial,MRP-L58,Digestion substraction 1,DS-1,Immature colon carcinoma transcript 1 protein,Mitochondrial large ribosomal subunit protein mL62 |
| 51 | YA (q) | Growth arrest and DNA damage-inducible proteins-interacting protein 1 | polymer | 222 | 25426.9 | 1 | UniProt (Q8TAE8) Pfam (PF10147) | Homo sapiens (Human) | 39S ribosomal protein L59,mitochondrial,MRP-L59,CKII beta-associating protein,CR6-interacting factor 1,CRIF1,Mitochondrial large ribosomal subunit protein mL64,Papillomavirus L2-interacting nuclear protein 1,PLINP-1,p53-responsive gene 6 protein |
| 52 | ZA (r) | 39S ribosomal protein S18a, mitochondrial | polymer | 196 | 22224.1 | 1 | UniProt (Q9NVS2) Pfam (PF01084) | Homo sapiens (Human) | S18mt-a,39S ribosomal protein S18-3,mitochondrial,MRP-S18-3,Mitochondrial large ribosomal subunit protein bS18a,Mitochondrial large ribosomal subunit protein mL66 |
| 53 | AB (s) | 39S ribosomal protein S30, mitochondrial | polymer | 439 | 50429.6 | 1 | UniProt (Q9NP92) Pfam (PF07147) | Homo sapiens (Human) | S30mt,Mitochondrial large ribosomal subunit protein mL65,Mitochondrial large ribosomal subunit protein mS30,Programmed cell death protein 9 |
| 54 | BB (u) | Mitochondrial assembly of ribosomal large subunit protein 1 | polymer | 234 | 26203.1 | 1 | UniProt (Q96EH3) Pfam (PF02410) | Homo sapiens (Human) | |
| 55 | CB (v) | MIEF1 upstream open reading frame protein | polymer | 70 | 8460.8 | 1 | UniProt (L0R8F8) Pfam (PF05347) | Homo sapiens (Human) | |
| 56 | DB (w) | Acyl carrier protein, mitochondrial | polymer | 156 | 17434.3 | 1 | UniProt (O14561) Pfam (PF00550) | Homo sapiens (Human) | ACP,CI-SDAP,NADH-ubiquinone oxidoreductase 9.6 kDa subunit |
| 57 | EB, FB, QE (0, 4, r) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) | |||
| 58 | AC, AD, AE, BC, BD... (A, C, E, W, g) | MAGNESIUM ION | non-polymer | 24.3 | 85 | Chemie (MG) PubChem (888) | |||
| 59 | JE, KE, LE (A, C) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 3 | Chemie (GTP) PubChem (177679032) PubChem (135400627) PubChem (135487750) PubChem (136088935) PubChem (136803486) PubChem (135398633) PubChem (135544356) PubChem (135547949) PubChem (135600366) PubChem (135749822) PubChem (136005188) PubChem (136073923) PubChem (136240914) PubChem (136664747) PubChem (136772743) PubChem (136772744) PubChem (136803487) PubChem (137286749) PubChem (164715984) PubChem (171699466) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 56 |
| Total formula weight | 1849215.6 | |
| Non-Polymers* | Number of molecules | 91 |
| Total formula weight | 3831.7 | |
| All* | Total formula weight | 1853047.3 |
