7ODL

SARS CoV-2 Spike protein, Bristol UK Deletion variant, Closed conformation, C1 symmetry

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C	Spike glycoprotein	polymer	1276	140510.2	3	UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB	Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2)	S glycoprotein,E2,Peplomer protein
2	A, B, C	LINOLEIC ACID	non-polymer		280.4	3	Chemie (EIC)
3	C, A, B	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	30	Chemie (NAG)

Sequence modifications

A, B, C: 1 - 1208 (UniProt: P0DTC2)

PDB	External Database	Details
-	Asn 679	deletion
-	Ser 680	deletion
-	Pro 681	deletion
-	Arg 682	deletion
-	Arg 683	deletion
-	Ala 684	deletion
-	Arg 685	deletion
-	Ser 686	deletion
Ile 687	Val 687	conflict
Gly 1209	-	expression tag
Gly 1210	-	expression tag
Gly 1211	-	expression tag
Gly 1212	-	expression tag
Ser 1213	-	expression tag
Gly 1214	-	expression tag
Gly 1215	-	expression tag
Gly 1216	-	expression tag
Gly 1217	-	expression tag
Ser 1218	-	expression tag
Gly 1219	-	expression tag
Ser 1220	-	expression tag
Gly 1221	-	expression tag
Tyr 1222	-	expression tag
Ile 1223	-	expression tag
Pro 1224	-	expression tag
Glu 1225	-	expression tag
Ala 1226	-	expression tag
Pro 1227	-	expression tag
Arg 1228	-	expression tag
Asp 1229	-	expression tag
Gly 1230	-	expression tag
Gln 1231	-	expression tag
Ala 1232	-	expression tag
Tyr 1233	-	expression tag
Val 1234	-	expression tag
Arg 1235	-	expression tag
Lys 1236	-	expression tag
Asp 1237	-	expression tag
Gly 1238	-	expression tag
Glu 1239	-	expression tag
Trp 1240	-	expression tag
Val 1241	-	expression tag
Leu 1242	-	expression tag
Leu 1243	-	expression tag
Ser 1244	-	expression tag
Thr 1245	-	expression tag
Phe 1246	-	expression tag
Leu 1247	-	expression tag
Gly 1248	-	expression tag
Gly 1249	-	expression tag
Gly 1250	-	expression tag
Gly 1251	-	expression tag
Gly 1252	-	expression tag
Ser 1253	-	expression tag
Gly 1254	-	expression tag
Gly 1255	-	expression tag
Gly 1256	-	expression tag
Gly 1257	-	expression tag
Ser 1258	-	expression tag
Gly 1259	-	expression tag
Ser 1260	-	expression tag
Glu 1261	-	expression tag
Gln 1262	-	expression tag
Lys 1263	-	expression tag
Leu 1264	-	expression tag
Ile 1265	-	expression tag
Ser 1266	-	expression tag
Glu 1267	-	expression tag
Glu 1268	-	expression tag
Asp 1269	-	expression tag
Leu 1270	-	expression tag
Gly 1271	-	expression tag
Ser 1272	-	expression tag
Gly 1273	-	expression tag
Ser 1274	-	expression tag
Gly 1275	-	expression tag
Ser 1276	-	expression tag
His 1277	-	expression tag
His 1278	-	expression tag
His 1279	-	expression tag
His 1280	-	expression tag
His 1281	-	expression tag
His 1282	-	expression tag
His 1283	-	expression tag
His 1284	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	3
	Total formula weight	421530.6
Non-Polymers*	Number of molecules	33
	Total formula weight	7477.6
All*	Total formula weight	429008.2

*Water molecules are not included.