7OD3
SARS CoV-2 Spike protein, Bristol UK Deletion variant, Closed conformation, C3 symmetry
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1276 | 140510.2 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein |
| 2 | BA, D, Q (C, A, B) | LINOLEIC ACID | non-polymer | 280.4 | 3 | Chemie (EIC) | |||
| 3 | AA, CA, DA, E, EA... (B, C, A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 33 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1208 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| - | Asn 679 | deletion |
| - | Ser 680 | deletion |
| - | Pro 681 | deletion |
| - | Arg 682 | deletion |
| - | Arg 683 | deletion |
| - | Ala 684 | deletion |
| - | Arg 685 | deletion |
| - | Ser 686 | deletion |
| Ile 687 | Val 687 | conflict |
| Gly 1209 | - | expression tag |
| Gly 1210 | - | expression tag |
| Gly 1211 | - | expression tag |
| Gly 1212 | - | expression tag |
| Ser 1213 | - | expression tag |
| Gly 1214 | - | expression tag |
| Gly 1215 | - | expression tag |
| Gly 1216 | - | expression tag |
| Gly 1217 | - | expression tag |
| Ser 1218 | - | expression tag |
| Gly 1219 | - | expression tag |
| Ser 1220 | - | expression tag |
| Gly 1221 | - | expression tag |
| Tyr 1222 | - | expression tag |
| Ile 1223 | - | expression tag |
| Pro 1224 | - | expression tag |
| Glu 1225 | - | expression tag |
| Ala 1226 | - | expression tag |
| Pro 1227 | - | expression tag |
| Arg 1228 | - | expression tag |
| Asp 1229 | - | expression tag |
| Gly 1230 | - | expression tag |
| Gln 1231 | - | expression tag |
| Ala 1232 | - | expression tag |
| Tyr 1233 | - | expression tag |
| Val 1234 | - | expression tag |
| Arg 1235 | - | expression tag |
| Lys 1236 | - | expression tag |
| Asp 1237 | - | expression tag |
| Gly 1238 | - | expression tag |
| Glu 1239 | - | expression tag |
| Trp 1240 | - | expression tag |
| Val 1241 | - | expression tag |
| Leu 1242 | - | expression tag |
| Leu 1243 | - | expression tag |
| Ser 1244 | - | expression tag |
| Thr 1245 | - | expression tag |
| Phe 1246 | - | expression tag |
| Leu 1247 | - | expression tag |
| Gly 1248 | - | expression tag |
| Gly 1249 | - | expression tag |
| Gly 1250 | - | expression tag |
| Gly 1251 | - | expression tag |
| Gly 1252 | - | expression tag |
| Ser 1253 | - | expression tag |
| Gly 1254 | - | expression tag |
| Gly 1255 | - | expression tag |
| Gly 1256 | - | expression tag |
| Gly 1257 | - | expression tag |
| Ser 1258 | - | expression tag |
| Gly 1259 | - | expression tag |
| Ser 1260 | - | expression tag |
| Glu 1261 | - | expression tag |
| Gln 1262 | - | expression tag |
| Lys 1263 | - | expression tag |
| Leu 1264 | - | expression tag |
| Ile 1265 | - | expression tag |
| Ser 1266 | - | expression tag |
| Glu 1267 | - | expression tag |
| Glu 1268 | - | expression tag |
| Asp 1269 | - | expression tag |
| Leu 1270 | - | expression tag |
| Gly 1271 | - | expression tag |
| Ser 1272 | - | expression tag |
| Gly 1273 | - | expression tag |
| Ser 1274 | - | expression tag |
| Gly 1275 | - | expression tag |
| Ser 1276 | - | expression tag |
| His 1277 | - | expression tag |
| His 1278 | - | expression tag |
| His 1279 | - | expression tag |
| His 1280 | - | expression tag |
| His 1281 | - | expression tag |
| His 1282 | - | expression tag |
| His 1283 | - | expression tag |
| His 1284 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 421530.6 | |
| Non-Polymers* | Number of molecules | 36 |
| Total formula weight | 8141.2 | |
| All* | Total formula weight | 429671.8 |
