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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7OBR

RNC-SRP early complex

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(1)		SRP RNApolymer24980677.81Canis lupus familiaris (dog)
2B
(5)		28S rRNApolymer34931131535.91Oryctolagus cuniculus (rabbit)
3C
(7)		5S ribosomal RNApolymer12038691.91GenBank (4CXE_4)Oryctolagus cuniculus
4D
(8)		5.8S ribosomal RNApolymer15650143.61GenBank (4CXE_3)Oryctolagus cuniculus
5E
(A)		60S ribosomal protein L8polymer24526701.31UniProt (A0A5F9D5B2)
Pfam (PF00181)
Pfam (PF03947)		Oryctolagus cuniculus (Rabbit)
6F
(B)		uL3polymer40245976.81UniProt (G1TL06)
Pfam (PF00297)		Oryctolagus cuniculus (Rabbit)
7G
(C)		60S ribosomal protein L4polymer41346388.91UniProt (G1SVW5)
Pfam (PF00573)
Pfam (PF14374)		Oryctolagus cuniculus (Rabbit)
8H
(D)		60S ribosomal protein L5polymer29734481.81UniProt (G1SYJ6)
Pfam (PF17144)
Pfam (PF14204)
UniProt (by SIFTS) (P19949)		Oryctolagus cuniculus (Rabbit)
9I
(E)		60S ribosomal protein L6polymer24828529.81UniProt (G1SKF7)
Pfam (PF03868)
Pfam (PF01159)		Oryctolagus cuniculus (Rabbit)
10J
(F)		uL30polymer22526662.81UniProt (G1SV32)
Pfam (PF08079)
Pfam (PF00327)		Oryctolagus cuniculus (Rabbit)
11K
(G)		60S ribosomal protein L7apolymer31936267.61UniProt (G1STW0)
Pfam (PF01248)		Oryctolagus cuniculus (Rabbit)
12L
(H)		60S ribosomal protein L9polymer19221871.41UniProt (G1SWI6)
Pfam (PF00347)		Oryctolagus cuniculus (Rabbit)
13M
(I)		60S ribosomal protein L10polymer21424643.11UniProt (B7NZQ2)
Pfam (PF00252)		Oryctolagus cuniculus (Rabbit)Ribosomal protein L10 (Predicted)
14N
(J)		Ribosomal protein L11polymer17820288.51UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)		Oryctolagus cuniculus (Rabbit)
15O
(L)		60S ribosomal protein L13polymer21024216.51UniProt (G1TPV0)Oryctolagus cuniculus (Rabbit)
16P
(M)		60S ribosomal protein L14polymer21823810.41UniProt (U3KNW6)
Pfam (PF01929)
UniProt (by SIFTS) (G1SZ12)		Oryctolagus cuniculus (Rabbit)
17Q
(N)		Ribosomal protein L15polymer20424207.31UniProt (G1T0C1)
Pfam (PF00827)		Oryctolagus cuniculus (Rabbit)
18R
(O)		60S ribosomal protein L13apolymer19923248.91UniProt (A0A287B929)Oryctolagus cuniculus (Rabbit)
19S
(P)		uL22polymer15317758.71UniProt (G1TVT6)
Pfam (PF00237)
UniProt (by SIFTS) (G1SCJ6)		Oryctolagus cuniculus (Rabbit)
20T
(Q)		eL18polymer18721457.41UniProt (G1TX70)
Pfam (PF17135)
UniProt (by SIFTS) (G1TFE0)		Oryctolagus cuniculus (Rabbit)
21U
(R)		60S RIBOSOMAL PROTEIN EL19polymer18021613.01UniProt (Q3T0W9)
Pfam (PF01280)
Pfam (PF25476)		Oryctolagus cuniculus
22V
(S)		60S ribosomal protein L18apolymer17520696.41UniProt (G1TTY7)
Pfam (PF01775)		Oryctolagus cuniculus (Rabbit)
23W
(T)		eL21polymer16018610.01UniProt (G1SHQ2)
Pfam (PF01157)		Oryctolagus cuniculus (Rabbit)
24X
(U)		Ribosomal protein L22polymer9911481.21UniProt (G1TSG1)
Pfam (PF01776)		Oryctolagus cuniculus (Rabbit)
25Y
(V)		Ribosomal protein L23polymer14014892.51UniProt (G1T6D1)
Pfam (PF00238)		Oryctolagus cuniculus (Rabbit)
26Z
(W)		Ribosomal protein L24polymer637512.81UniProt (G1SE28)
Pfam (PF01246)		Oryctolagus cuniculus (Rabbit)
27AA
(X)		uL23polymer15617768.21UniProt (G1SE76)
Pfam (PF03939)
Pfam (PF00276)		Oryctolagus cuniculus (Rabbit)
28BA
(Y)		Ribosomal protein L26polymer14517303.41UniProt (G1SQH0)
Pfam (PF16906)
Pfam (PF00467)		Oryctolagus cuniculus (Rabbit)
29CA
(Z)		60S ribosomal protein L27polymer13615835.81UniProt (G1TXF6)
Pfam (PF00467)
Pfam (PF01777)		Oryctolagus cuniculus (Rabbit)
30DA
(a)		uL15polymer14716489.41UniProt (G1SNY0)
Pfam (PF00828)		Oryctolagus cuniculus (Rabbit)
31EA
(b)		60S ribosomal protein L29polymer22324608.21UniProt (G1TN82)
Pfam (PF01779)
UniProt (by SIFTS) (G1SGR6)		Oryctolagus cuniculus (Rabbit)
32FA
(c)		60S ribosomal protein L30polymer9410496.41UniProt (G1TDL2)
Pfam (PF01248)		Oryctolagus cuniculus (Rabbit)
33GA
(d)		eL31polymer12514494.91UniProt (G1SHG0)
Pfam (PF01198)		Oryctolagus cuniculus (Rabbit)
34HA
(e)		eL32polymer15718350.01UniProt (G1TUN8)
Pfam (PF01655)		Oryctolagus cuniculus (Rabbit)
35IA
(f)		eL33polymer11012580.81UniProt (G1SF08)
Pfam (PF01247)		Oryctolagus cuniculus (Rabbit)
36JA
(g)		60S ribosomal protein L34polymer12914557.51UniProt (G1U945)
Pfam (PF01199)
UniProt (by SIFTS) (G1TXG5)		Oryctolagus cuniculus (Rabbit)
37KA
(h)		uL29polymer12314566.61UniProt (G1SIT5)
Pfam (PF00831)		Oryctolagus cuniculus (Rabbit)
38LA
(i)		60S ribosomal protein L36polymer10211888.41UniProt (G1TTQ5)
Pfam (PF01158)		Oryctolagus cuniculus (Rabbit)
39MA
(j)		Ribosomal protein L37polymer9711111.01UniProt (U3KPD5)
Pfam (PF01907)		Oryctolagus cuniculus (Rabbit)
40NA
(k)		eL38polymer698107.81Oryctolagus cuniculus (rabbit)
41OA
(l)		eL39polymer516426.81UniProt (G1SYU7)
Pfam (PF00832)		Oryctolagus cuniculus (Rabbit)
42PA
(m)		60S RIBOSOMAL PROTEIN EL40polymer526199.61UniProt (P63048)
Pfam (PF01020)		Oryctolagus cuniculus
43QA
(n)		60s ribosomal protein l41polymer253473.51UniProt (A0A087WNH4)
Pfam (PF05162)		Oryctolagus cuniculus (Rabbit)eL41
44RA
(o)		eL42polymer10512329.81UniProt (A0A5F9D391)
Pfam (PF00935)		Oryctolagus cuniculus (Rabbit)
45SA
(p)		eL43polymer9210299.41UniProt (G1SY53)
Pfam (PF01780)		Oryctolagus cuniculus (Rabbit)
46TA
(q)		Signal recognition particle 19polymer14416183.71UniProt (J9PAS6)
Pfam (PF01922)		Canis lupus familiaris (Dog Canis familiaris)
47UA
(r)		eL28polymer13715783.61UniProt (G1U7L1)
Pfam (PF01778)		Oryctolagus cuniculus (Rabbit)
48VA
(s)		Dipeptidyl aminopeptidase Bpolymer677746.91UniProt (P18962)Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)DPAP B,YSCV
49WA
(t)		Signal recognition particle 14 kDa proteinpolymer11012512.71UniProt (P16255)
Pfam (PF02290)		Canis lupus familiaris (Dog)SRP14
50XA
(u)		Signal recognition particle subunit SRP68polymer62270377.01UniProt (Q00004)
Pfam (PF16969)		Canis lupus familiaris (Dog Canis familiaris)SRP68,Signal recognition particle 68 kDa protein
51YA
(w)		Signal recognition particle 9 kDa proteinpolymer8610061.71UniProt (P21262)
Pfam (PF05486)		Canis lupus familiaris (Dog Canis familiaris)SRP9
52ZA
(x)		Signal recognition particle 54 kDa proteinpolymer50455775.71UniProt (P61010)
Pfam (PF02881)
Pfam (PF00448)
Pfam (PF02978)		Canis lupus familiaris (Dog)SRP54
53AB
(z)		Signal recognition particle subunit SRP72polymer67174608.11UniProt (P33731)
Pfam (PF17004)
Pfam (PF13181)
Pfam (PF08492)		Canis lupus familiaris (Dog Canis familiaris)SRP72,Signal recognition particle 72 kDa protein
54AC, AD, AE, BB, BC...
(5)		MAGNESIUM IONnon-polymer24.397Chemie (MG)
55UE, VE, WE, XE, YE
(g, j, m, o, p)		ZINC IONnon-polymer65.45Chemie (ZN)
56ZE
(x)		GUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
Sequence modifications
A: 1 - 245 (UniProt: A0A5F9D5B2)
PDBExternal DatabaseDetails
Lys 46-insertion
Asp 47-insertion
Ile 48-insertion
Ile 49-insertion
His 50-insertion
Asp 51-insertion
Pro 52-insertion
Gly 53-insertion
Arg 54-insertion
Gly 55-insertion
Ala 56-insertion
Pro 57-insertion
Leu 58-insertion
Ala 59-insertion
Lys 60-insertion
Val 61-insertion
Val 62-insertion
Phe 63-insertion
Arg 64-insertion
Asp 65-insertion
Pro 66-insertion
Tyr 67-insertion
Arg 68-insertion
Phe 69-insertion
D: 2 - 297 (UniProt: G1SYJ6)
PDBExternal DatabaseDetails
Met 1-initiating methionine
E: 38 - 284 (UniProt: G1SKF7)
PDBExternal DatabaseDetails
Arg 126Lys 133conflict
Gln 217Lys 224conflict
F: 26 - 250 (UniProt: G1SV32)
PDBExternal DatabaseDetails
Ala 175Thr 174conflict
Gly 185Asn 184conflict
Arg 202His 201conflict
Glu 233Gly 232conflict
L: 2 - 211 (UniProt: G1TPV0)
PDBExternal DatabaseDetails
Ala 47-insertion
Pro 48-insertion
Arg 49-insertion
Pro 50-insertion
Ala 51-insertion
Ser 52-insertion
Gly 53-insertion
Pro 54-insertion
Leu 55-insertion
Q: 2 - 188 (UniProt: G1TX70)
PDBExternal DatabaseDetails
Arg 6Leu 6conflict
Arg 14Trp 14conflict
Ile 23Met 23conflict
Tyr 24Cys 24conflict
Arg 38His 38conflict
Asn 57Lys 57conflict
Met 66Val 66conflict
Gly 74Asp 74conflict
Arg 75Pro 75conflict
Gly 77Asn 77conflict
Ser 106Thr 106conflict
Arg 110His 110conflict
Gly 117Glu 117conflict
Asp 124His 124conflict
Cys 134Arg 134conflict
Arg 150Gln 150conflict
Arg 172Gly 172conflict
Arg 184Trp 184conflict
S: 2 - 175 (UniProt: G1TTY7)
PDBExternal DatabaseDetails
Pro 18-insertion
Thr 19-insertion
Pro 20Ser 18conflict
Cys 22Ser 20conflict
Arg 23Pro 21conflict
Thr 24Ala 22conflict
Ser 49Leu 47conflict
Gln 50Glu 48conflict
Arg 95His 93conflict
Thr 101Ile 99conflict
Thr 102Met 100conflict
Gly 104Ser 102conflict
Ile 126Val 124conflict
Ile 132Met 130conflict
Ser 135Ala 133conflict
Lys 136Arg 134conflict
Arg 138Pro 136conflict
Lys 149Arg 147conflict
Lys 151Arg 149conflict
Thr 168Tyr 166conflict
Thr 169Ala 167conflict
Phe 176-insertion
U: 17 - 115 (UniProt: G1TSG1)
PDBExternal DatabaseDetails
Gly 32Arg 32variant
Ala 36Glu 36variant
Phe 39Ser 39variant
Gly 54Arg 54variant
Val 60Ala 60variant
Arg 97His 97variant
c: 13 - 106 (UniProt: G1TDL2)
PDBExternal DatabaseDetails
Thr 34Ser 34conflict
Ala 95Ser 95conflict
s: 24 - 90 (UniProt: P18962)
PDBExternal DatabaseDetails
His 83Gln 83conflict
His 90Gln 90conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains53
Total formula weight2352303.2
Non-Polymers*Number of molecules103
Total formula weight3127.8
All*Total formula weight2355431.0
*Water molecules are not included.

247947

PDB entries from 2026-01-21

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