Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 1 | SRP RNA | polymer | 249 | 80677.8 | 1 | Canis lupus familiaris (dog) | ||
2 | 5 | 28S rRNA | polymer | 3493 | 1131535.9 | 1 | Oryctolagus cuniculus (rabbit) | ||
3 | 7 | 5S ribosomal RNA | polymer | 120 | 38691.9 | 1 | GenBank (4CXE_4) | Oryctolagus cuniculus | |
4 | 8 | 5.8S ribosomal RNA | polymer | 156 | 50143.6 | 1 | GenBank (4CXE_3) | Oryctolagus cuniculus | |
5 | A | 60S ribosomal protein L8 | polymer | 245 | 26701.3 | 1 | UniProt (A0A5F9D5B2) Pfam (PF03947) In PDB | Oryctolagus cuniculus (Rabbit) | |
6 | B | uL3 | polymer | 402 | 45976.8 | 1 | UniProt (G1TL06) Pfam (PF00297) In PDB | Oryctolagus cuniculus (Rabbit) | |
7 | C | 60S ribosomal protein L4 | polymer | 413 | 46388.9 | 1 | UniProt (G1SVW5) Pfam (PF00573) Pfam (PF14374) In PDB | Oryctolagus cuniculus (Rabbit) | |
8 | D | 60S ribosomal protein L5 | polymer | 297 | 34481.8 | 1 | UniProt (G1SYJ6) UniProt (by SIFTS) (P19949) In PDB | Oryctolagus cuniculus (Rabbit) | |
9 | E | 60S ribosomal protein L6 | polymer | 248 | 28529.8 | 1 | UniProt (G1SKF7) Pfam (PF03868) Pfam (PF01159) In PDB | Oryctolagus cuniculus (Rabbit) | |
10 | F | uL30 | polymer | 225 | 26662.8 | 1 | UniProt (G1SV32) Pfam (PF08079) Pfam (PF00327) In PDB | Oryctolagus cuniculus (Rabbit) | |
11 | G | 60S ribosomal protein L7a | polymer | 319 | 36267.6 | 1 | UniProt (G1STW0) Pfam (PF01248) In PDB | Oryctolagus cuniculus (Rabbit) | |
12 | H | 60S ribosomal protein L9 | polymer | 192 | 21871.4 | 1 | UniProt (G1SWI6) Pfam (PF00347) In PDB | Oryctolagus cuniculus (Rabbit) | |
13 | I | 60S ribosomal protein L10 | polymer | 214 | 24643.1 | 1 | UniProt (B7NZQ2) Pfam (PF00252) In PDB | Oryctolagus cuniculus (Rabbit) | Ribosomal protein L10 (Predicted) |
14 | J | Ribosomal protein L11 | polymer | 178 | 20288.5 | 1 | UniProt (G1TUB8) Pfam (PF00281) Pfam (PF00673) In PDB | Oryctolagus cuniculus (Rabbit) | |
15 | L | 60S ribosomal protein L13 | polymer | 210 | 24216.5 | 1 | UniProt (G1TPV0) In PDB | Oryctolagus cuniculus (Rabbit) | |
16 | M | 60S ribosomal protein L14 | polymer | 218 | 23810.4 | 1 | UniProt (U3KNW6) Pfam (PF01929) UniProt (by SIFTS) (G1SZ12) In PDB | Oryctolagus cuniculus (Rabbit) | |
17 | N | Ribosomal protein L15 | polymer | 204 | 24207.3 | 1 | UniProt (G1T0C1) Pfam (PF00827) In PDB | Oryctolagus cuniculus (Rabbit) | |
18 | O | 60S ribosomal protein L13a | polymer | 199 | 23248.9 | 1 | UniProt (A0A287B929) In PDB | Oryctolagus cuniculus (Rabbit) | |
19 | P | uL22 | polymer | 153 | 17758.7 | 1 | UniProt (G1TVT6) Pfam (PF00237) UniProt (by SIFTS) (G1SCJ6) In PDB | Oryctolagus cuniculus (Rabbit) | |
20 | Q | eL18 | polymer | 187 | 21457.4 | 1 | UniProt (G1TX70) Pfam (PF17135) In PDB | Oryctolagus cuniculus (Rabbit) | |
21 | R | 60S RIBOSOMAL PROTEIN EL19 | polymer | 180 | 21613.0 | 1 | UniProt (Q3T0W9) Pfam (PF01280) In PDB | Oryctolagus cuniculus | |
22 | S | 60S ribosomal protein L18a | polymer | 175 | 20696.4 | 1 | UniProt (G1TTY7) Pfam (PF01775) In PDB | Oryctolagus cuniculus (Rabbit) | |
23 | T | eL21 | polymer | 160 | 18610.0 | 1 | UniProt (G1SHQ2) Pfam (PF01157) In PDB | Oryctolagus cuniculus (Rabbit) | |
24 | U | Ribosomal protein L22 | polymer | 99 | 11481.2 | 1 | UniProt (G1TSG1) Pfam (PF01776) In PDB | Oryctolagus cuniculus (Rabbit) | |
25 | V | Ribosomal protein L23 | polymer | 140 | 14892.5 | 1 | UniProt (G1T6D1) Pfam (PF00238) In PDB | Oryctolagus cuniculus (Rabbit) | |
26 | W | Ribosomal protein L24 | polymer | 63 | 7512.8 | 1 | UniProt (G1SE28) Pfam (PF01246) In PDB | Oryctolagus cuniculus (Rabbit) | |
27 | X | uL23 | polymer | 156 | 17768.2 | 1 | UniProt (G1SE76) Pfam (PF03939) Pfam (PF00276) In PDB | Oryctolagus cuniculus (Rabbit) | |
28 | Y | Ribosomal protein L26 | polymer | 145 | 17303.4 | 1 | UniProt (G1SQH0) Pfam (PF16906) Pfam (PF00467) In PDB | Oryctolagus cuniculus (Rabbit) | |
29 | Z | 60S ribosomal protein L27 | polymer | 136 | 15835.8 | 1 | UniProt (G1TXF6) Pfam (PF00467) Pfam (PF01777) In PDB | Oryctolagus cuniculus (Rabbit) | |
30 | a | uL15 | polymer | 147 | 16489.4 | 1 | UniProt (G1SNY0) Pfam (PF00828) In PDB | Oryctolagus cuniculus (Rabbit) | |
31 | b | 60S ribosomal protein L29 | polymer | 223 | 24608.2 | 1 | UniProt (G1TN82) Pfam (PF01779) UniProt (by SIFTS) (G1SGR6) In PDB | Oryctolagus cuniculus (Rabbit) | |
32 | c | 60S ribosomal protein L30 | polymer | 94 | 10496.4 | 1 | UniProt (G1TDL2) Pfam (PF01248) In PDB | Oryctolagus cuniculus (Rabbit) | |
33 | d | eL31 | polymer | 125 | 14494.9 | 1 | UniProt (G1SHG0) Pfam (PF01198) In PDB | Oryctolagus cuniculus (Rabbit) | |
34 | e | eL32 | polymer | 157 | 18350.0 | 1 | UniProt (G1TUN8) Pfam (PF01655) In PDB | Oryctolagus cuniculus (Rabbit) | |
35 | f | eL33 | polymer | 110 | 12580.8 | 1 | UniProt (G1SF08) Pfam (PF01247) In PDB | Oryctolagus cuniculus (Rabbit) | |
36 | g | 60S ribosomal protein L34 | polymer | 129 | 14557.5 | 1 | UniProt (G1U945) Pfam (PF01199) UniProt (by SIFTS) (G1TXG5) In PDB | Oryctolagus cuniculus (Rabbit) | |
37 | h | uL29 | polymer | 123 | 14566.6 | 1 | UniProt (G1SIT5) Pfam (PF00831) In PDB | Oryctolagus cuniculus (Rabbit) | |
38 | i | 60S ribosomal protein L36 | polymer | 102 | 11888.4 | 1 | UniProt (G1TTQ5) Pfam (PF01158) In PDB | Oryctolagus cuniculus (Rabbit) | |
39 | j | Ribosomal protein L37 | polymer | 97 | 11111.0 | 1 | UniProt (U3KPD5) Pfam (PF01907) In PDB | Oryctolagus cuniculus (Rabbit) | |
40 | k | eL38 | polymer | 69 | 8107.8 | 1 | Oryctolagus cuniculus (rabbit) | ||
41 | l | eL39 | polymer | 51 | 6426.8 | 1 | UniProt (G1SYU7) Pfam (PF00832) In PDB | Oryctolagus cuniculus (Rabbit) | |
42 | m | 60S RIBOSOMAL PROTEIN EL40 | polymer | 52 | 6199.6 | 1 | UniProt (P63048) Pfam (PF01020) In PDB | Oryctolagus cuniculus | |
43 | n | 60s ribosomal protein l41 | polymer | 25 | 3473.5 | 1 | UniProt (A0A087WNH4) Pfam (PF05162) In PDB | Oryctolagus cuniculus (Rabbit) | eL41 |
44 | o | eL42 | polymer | 105 | 12329.8 | 1 | UniProt (A0A5F9D391) Pfam (PF00935) In PDB | Oryctolagus cuniculus (Rabbit) | |
45 | p | eL43 | polymer | 92 | 10299.4 | 1 | UniProt (G1SY53) Pfam (PF01780) In PDB | Oryctolagus cuniculus (Rabbit) | |
46 | q | Signal recognition particle 19 | polymer | 144 | 16183.7 | 1 | UniProt (J9PAS6) Pfam (PF01922) In PDB | Canis lupus familiaris (Dog Canis familiaris) | |
47 | r | eL28 | polymer | 137 | 15783.6 | 1 | UniProt (G1U7L1) Pfam (PF01778) In PDB | Oryctolagus cuniculus (Rabbit) | |
48 | s | Dipeptidyl aminopeptidase B | polymer | 67 | 7746.9 | 1 | UniProt (P18962) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | DPAP B,YSCV |
49 | t | Signal recognition particle 14 kDa protein | polymer | 110 | 12512.7 | 1 | UniProt (P16255) Pfam (PF02290) In PDB | Canis lupus familiaris (Dog) | SRP14 |
50 | u | Signal recognition particle subunit SRP68 | polymer | 622 | 70377.0 | 1 | UniProt (Q00004) Pfam (PF16969) In PDB | Canis lupus familiaris (Dog Canis familiaris) | SRP68,Signal recognition particle 68 kDa protein |
51 | w | Signal recognition particle 9 kDa protein | polymer | 86 | 10061.7 | 1 | UniProt (P21262) Pfam (PF05486) In PDB | Canis lupus familiaris (Dog Canis familiaris) | SRP9 |
52 | x | Signal recognition particle 54 kDa protein | polymer | 504 | 55775.7 | 1 | UniProt (P61010) Pfam (PF02881) Pfam (PF00448) Pfam (PF02978) In PDB | Canis lupus familiaris (Dog) | SRP54 |
53 | z | Signal recognition particle subunit SRP72 | polymer | 671 | 74608.1 | 1 | UniProt (P33731) Pfam (PF17004) Pfam (PF13181) Pfam (PF08492) In PDB | Canis lupus familiaris (Dog Canis familiaris) | SRP72,Signal recognition particle 72 kDa protein |
54 | 5 | MAGNESIUM ION | non-polymer | 24.3 | 97 | Chemie (MG) | |||
55 | g, j, m, o, p | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) | |||
56 | x | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) |
Sequence modifications
A: 1 - 245 (UniProt: A0A5F9D5B2)
D: 2 - 297 (UniProt: G1SYJ6)
E: 38 - 284 (UniProt: G1SKF7)
F: 26 - 250 (UniProt: G1SV32)
L: 2 - 211 (UniProt: G1TPV0)
Q: 2 - 188 (UniProt: G1TX70)
S: 2 - 175 (UniProt: G1TTY7)
U: 17 - 115 (UniProt: G1TSG1)
c: 13 - 106 (UniProt: G1TDL2)
s: 24 - 90 (UniProt: P18962)
PDB | External Database | Details |
---|---|---|
Lys 46 | - | insertion |
Asp 47 | - | insertion |
Ile 48 | - | insertion |
Ile 49 | - | insertion |
His 50 | - | insertion |
Asp 51 | - | insertion |
Pro 52 | - | insertion |
Gly 53 | - | insertion |
Arg 54 | - | insertion |
Gly 55 | - | insertion |
Ala 56 | - | insertion |
Pro 57 | - | insertion |
Leu 58 | - | insertion |
Ala 59 | - | insertion |
Lys 60 | - | insertion |
Val 61 | - | insertion |
Val 62 | - | insertion |
Phe 63 | - | insertion |
Arg 64 | - | insertion |
Asp 65 | - | insertion |
Pro 66 | - | insertion |
Tyr 67 | - | insertion |
Arg 68 | - | insertion |
Phe 69 | - | insertion |
PDB | External Database | Details |
---|---|---|
Met 1 | - | initiating methionine |
PDB | External Database | Details |
---|---|---|
Arg 126 | Lys 133 | conflict |
Gln 217 | Lys 224 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 175 | Thr 174 | conflict |
Gly 185 | Asn 184 | conflict |
Arg 202 | His 201 | conflict |
Glu 233 | Gly 232 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 47 | - | insertion |
Pro 48 | - | insertion |
Arg 49 | - | insertion |
Pro 50 | - | insertion |
Ala 51 | - | insertion |
Ser 52 | - | insertion |
Gly 53 | - | insertion |
Pro 54 | - | insertion |
Leu 55 | - | insertion |
PDB | External Database | Details |
---|---|---|
Arg 6 | Leu 6 | conflict |
Arg 14 | Trp 14 | conflict |
Ile 23 | Met 23 | conflict |
Tyr 24 | Cys 24 | conflict |
Arg 38 | His 38 | conflict |
Asn 57 | Lys 57 | conflict |
Met 66 | Val 66 | conflict |
Gly 74 | Asp 74 | conflict |
Arg 75 | Pro 75 | conflict |
Gly 77 | Asn 77 | conflict |
Ser 106 | Thr 106 | conflict |
Arg 110 | His 110 | conflict |
Gly 117 | Glu 117 | conflict |
Asp 124 | His 124 | conflict |
Cys 134 | Arg 134 | conflict |
Arg 150 | Gln 150 | conflict |
Arg 172 | Gly 172 | conflict |
Arg 184 | Trp 184 | conflict |
PDB | External Database | Details |
---|---|---|
Pro 18 | - | insertion |
Thr 19 | - | insertion |
Pro 20 | Ser 18 | conflict |
Cys 22 | Ser 20 | conflict |
Arg 23 | Pro 21 | conflict |
Thr 24 | Ala 22 | conflict |
Ser 49 | Leu 47 | conflict |
Gln 50 | Glu 48 | conflict |
Arg 95 | His 93 | conflict |
Thr 101 | Ile 99 | conflict |
Thr 102 | Met 100 | conflict |
Gly 104 | Ser 102 | conflict |
Ile 126 | Val 124 | conflict |
Ile 132 | Met 130 | conflict |
Ser 135 | Ala 133 | conflict |
Lys 136 | Arg 134 | conflict |
Arg 138 | Pro 136 | conflict |
Lys 149 | Arg 147 | conflict |
Lys 151 | Arg 149 | conflict |
Thr 168 | Tyr 166 | conflict |
Thr 169 | Ala 167 | conflict |
Phe 176 | - | insertion |
PDB | External Database | Details |
---|---|---|
Gly 32 | Arg 32 | variant |
Ala 36 | Glu 36 | variant |
Phe 39 | Ser 39 | variant |
Gly 54 | Arg 54 | variant |
Val 60 | Ala 60 | variant |
Arg 97 | His 97 | variant |
PDB | External Database | Details |
---|---|---|
Thr 34 | Ser 34 | conflict |
Ala 95 | Ser 95 | conflict |
PDB | External Database | Details |
---|---|---|
His 83 | Gln 83 | conflict |
His 90 | Gln 90 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 53 |
Total formula weight | 2352303.2 | |
Non-Polymers* | Number of molecules | 103 |
Total formula weight | 3127.8 | |
All* | Total formula weight | 2355431.0 |