7O8Y
Anomalous bromide substructure of NmHR under dark state conditions determined at 13.7 keV with serial crystallography
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Chloride pumping rhodopsin | polymer | 296 | 32913.4 | 1 | UniProt (W8VZW3) | Nonlabens marinus S1-08 | |
| 2 | B (A) | RETINAL | non-polymer | 284.4 | 1 | Chemie (RET) PubChem (1070) PubChem (638015) PubChem (5353924) PubChem (6436079) PubChem (6436082) PubChem (11426127) PubChem (12227253) PubChem (12227254) PubChem (12227256) PubChem (12227257) PubChem (12227258) PubChem (12227259) PubChem (12227269) PubChem (12227270) PubChem (12227271) PubChem (23254473) PubChem (177675058) PubChem (5280490) PubChem (5381765) PubChem (87082476) PubChem (87110449) PubChem (87110609) PubChem (88398773) PubChem (88407543) PubChem (134688327) PubChem (140510408) PubChem (145826762) PubChem (169423542) PubChem (172878320) | |||
| 3 | C, D, H (A) | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate | non-polymer | 356.5 | 3 | Chemie (OLC) PubChem (5283468) PubChem (5364833) PubChem (11451146) PubChem (12178130) PubChem (25021708) PubChem (46840179) PubChem (54294270) PubChem (33022) PubChem (54294271) | |||
| 4 | E, F, G, I, J... (A) | OLEIC ACID | non-polymer | 282.5 | 6 | Chemie (OLA) PubChem (965) PubChem (445639) PubChem (637517) | |||
| 5 | L, M, N, O, P (A) | BROMIDE ION | non-polymer | 79.9 | 5 | Chemie (BR) PubChem (259) | |||
| 6 | Q (A) | water | water | 18.0 | 78 | Chemie (HOH) |
Sequence modifications
A: 1 - 272 (UniProt: W8VZW3)
| PDB | External Database | Details |
|---|---|---|
| Met -15 | - | initiating methionine |
| Ala -14 | - | expression tag |
| Ser -13 | - | expression tag |
| Met -12 | - | expression tag |
| Thr -11 | - | expression tag |
| Gly -10 | - | expression tag |
| Gly -9 | - | expression tag |
| Gln -8 | - | expression tag |
| Gln -7 | - | expression tag |
| Met -6 | - | expression tag |
| Gly -5 | - | expression tag |
| Arg -4 | - | expression tag |
| Asp -3 | - | expression tag |
| Pro -2 | - | expression tag |
| Asn -1 | - | expression tag |
| Ser 0 | - | expression tag |
| Leu 273 | - | expression tag |
| Glu 274 | - | expression tag |
| His 275 | - | expression tag |
| His 276 | - | expression tag |
| His 277 | - | expression tag |
| His 278 | - | expression tag |
| His 279 | - | expression tag |
| His 280 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 32913.4 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 3448.3 | |
| All* | Total formula weight | 36361.8 |
