7O0X

Cryo-EM structure (model_2b) of the RC-dLH complex from Gemmatimonas phototrophica at 2.44 A

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C, D, E... (AA, AB, AC, AD, AE...)	LHh-alpha	polymer	54	6061.2	24		Gemmatimonas phototrophica
2	AA, AC, BA, BC, CA... (BA, BB, BC, BD, BE...)	Light-harvesting protein B:885 subunit beta	polymer	44	5084.8	40	UniProt (A0A143BHS8) Pfam (PF00556)	Gemmatimonas phototrophica
3	WA (C)	MULTIHEME_CYTC domain-containing protein	polymer	354	38457.6	1	UniProt (A0A143BHR6) Pfam (PF02276)	Gemmatimonas phototrophica
4	XA (C1)	RC-S	polymer	202	21079.1	1		Gemmatimonas phototrophica
5	YA (C2)	RC-U	polymer	125	13656.4	1	UniProt (A0A143BK87)	Gemmatimonas phototrophica
6	ZA (H1)	PRCH domain-containing protein	polymer	67	7854.9	1	UniProt (A0A143BJ28) Pfam (PF03967)	Gemmatimonas phototrophica
7	AB (H2)	RC-Hc	polymer	181	20022.6	1		Gemmatimonas phototrophica
8	BB (L)	Photosynthetic reaction center L subunit	polymer	274	30581.7	1	UniProt (A0A143BHR2) Pfam (PF00124)	Gemmatimonas phototrophica	Reaction center protein L chain
9	CB (M)	RC-M	polymer	367	41154.1	1		Gemmatimonas phototrophica
10	DB (aa)	LHC domain-containing protein	polymer	71	7695.0	1	UniProt (A0A143BHS7) Pfam (PF00556)	Gemmatimonas phototrophica
11	EB, FB, GB, HB, IB... (ab, ac, ad, ae, af...)	LHC domain-containing protein	polymer	71	7723.1	15	UniProt (A0A143BHS7) Pfam (PF00556)	Gemmatimonas phototrophica
12	JC, KC (MG, CG)	alpha-L-rhamnopyranose-(1-4)-alpha-D-mannopyranose	branched		326.3	2	In PDB
13	AE, AM, BD, BF, BG... (AM, ba, AF, AV, BD...)	BACTERIOCHLOROPHYLL A	non-polymer		911.5	108	Chemie (BCL)
14	AF, AG, AI, AJ, AL... (AV, BD, BO, BT, ac...)	DODECYL-BETA-D-MALTOSIDE	non-polymer		510.6	119	Chemie (LMT)
15	AD, AH, AO, BN, CG... (AE, BJ, bn, bh, BE...)	(2~{E},4~{E},6~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{Z},24~{E},26~{E},28~{E})-23-methanoyl-31-methoxy-2,6,10,14,19,27,31-heptamethyl-dotriaconta-2,4,6,10,12,14,16,18,20,22,24,26,28-tridecaenoic acid	non-polymer		610.9	40	Chemie (V7N)
16	VJ, WJ, XJ, YJ (C)	HEME C	non-polymer		618.5	4	Chemie (HEC)
17	BK, ZJ (C1, C)	2-acetamido-2-deoxy-alpha-D-glucopyranose	non-polymer		221.2	2	Chemie (NDG)
18	AK, XK (C, M)	(2~{S},3~{S},4~{S},5~{S})-4,5-diacetyloxy-3-oxidanyl-oxane-2-carboxylic acid	non-polymer		262.2	2	Chemie (V75)
19	CK (H1)	(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate	non-polymer		749.0	1	Chemie (PGW)
20	BM, DK, DN, DO, FM... (ba, H1, bh, bn, bb...)	(19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate	non-polymer		689.9	20	Chemie (0V9)
21	CL, EK, HL, IL, OL... (ad, H1, af, ai, M)	(2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate	non-polymer		1241.6	6	Chemie (CD4)
22	FK, UK (L, M)	BACTERIOPHEOPHYTIN A	non-polymer		889.2	2	Chemie (BPH)
23	NK, UL, VK (L, an, M)	MENAQUINONE 8	non-polymer		717.1	3	Chemie (MQ8)
24	PK (M)	FE (III) ION	non-polymer		55.8	1	Chemie (FE)
25	WK (M)	SPIRILLOXANTHIN	non-polymer		596.9	1	Chemie (CRT)
26	FL, KL (af, ag)	[(2~{S})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]oxy-2-(12-methyltridecanoyloxy)propyl] 12-methyltridecanoate	non-polymer		837.1	2	Chemie (V7B)
27	ML (ai)	[(2~{S})-3-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-octadecanoyloxy-propyl] octadecanoate	non-polymer		787.2	1	Chemie (UYH)
28	AP, AQ, BP, BQ, CP... (AR, ai, AS, aj, AT...)	water	water		18.0	521	Chemie (HOH)

Contents of the asymmetric unit

Polymers	Number of chains	87
	Total formula weight	645207.1
Branched	Number of molecules	2
	Total formula weight	652.6
Non-Polymers*	Number of molecules	312
	Total formula weight	216122.6
All*	Total formula weight	861982.3

*Water molecules are not included.