7O0W
Cryo-EM structure of the RC-dLH complex (model_1b) from Gemmatimonas phototrophica at 2.47 A
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (AA, AB, AC, AD, AE...) | LHh-alpha | polymer | 54 | 6061.2 | 24 | Gemmatimonas phototrophica | ||
| 2 | AA, AC, BA, BC, CA... (BA, BB, BC, BD, BE...) | Light-harvesting protein B:885 subunit beta | polymer | 44 | 5084.8 | 40 | UniProt (A0A143BHS8) Pfam (PF00556) | Gemmatimonas phototrophica | |
| 3 | WA (C) | MULTIHEME_CYTC domain-containing protein | polymer | 354 | 38457.6 | 1 | UniProt (A0A143BHR6) Pfam (PF02276) | Gemmatimonas phototrophica | |
| 4 | XA (C1) | RC-S | polymer | 202 | 21079.1 | 1 | Gemmatimonas phototrophica | ||
| 5 | YA (C2) | RC-U | polymer | 125 | 13656.4 | 1 | UniProt (A0A143BK87) | Gemmatimonas phototrophica | |
| 6 | ZA (H1) | PRCH domain-containing protein | polymer | 67 | 7854.9 | 1 | UniProt (A0A143BJ28) Pfam (PF03967) | Gemmatimonas phototrophica | |
| 7 | AB (H2) | RC-Hc | polymer | 181 | 20022.6 | 1 | Gemmatimonas phototrophica | ||
| 8 | BB (L) | Photosynthetic reaction center L subunit | polymer | 274 | 30581.7 | 1 | UniProt (A0A143BHR2) Pfam (PF00124) | Gemmatimonas phototrophica | Reaction center protein L chain |
| 9 | CB (M) | RC-M | polymer | 367 | 41154.1 | 1 | Gemmatimonas phototrophica | ||
| 10 | DB (aa) | LHC domain-containing protein | polymer | 71 | 7695.0 | 1 | UniProt (A0A143BHS7) Pfam (PF00556) | Gemmatimonas phototrophica | |
| 11 | EB, FB, GB, HB, IB... (ab, ac, ad, ae, af...) | LHC domain-containing protein | polymer | 71 | 7723.1 | 15 | UniProt (A0A143BHS7) Pfam (PF00556) | Gemmatimonas phototrophica | |
| 12 | JC, KC (CG, MG) | alpha-L-rhamnopyranose-(1-4)-alpha-D-mannopyranose | branched | 326.3 | 2 | In PDB | |||
| 13 | AJ, AM, BD, BE, BF... (BS, ak, AE, AM, AU...) | BACTERIOCHLOROPHYLL A | non-polymer | 911.5 | 108 | Chemie (BCL) | |||
| 14 | AD, AF, AH, AI, AO... (AE, AT, BI, BN, bm...) | DODECYL-BETA-D-MALTOSIDE | non-polymer | 510.6 | 123 | Chemie (LMT) | |||
| 15 | AE, AG, AN, CI, CO... (AM, BD, bg, BO, bn...) | (2~{E},4~{E},6~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{Z},24~{E},26~{E},28~{E})-23-methanoyl-31-methoxy-2,6,10,14,19,27,31-heptamethyl-dotriaconta-2,4,6,10,12,14,16,18,20,22,24,26,28-tridecaenoic acid | non-polymer | 610.9 | 40 | Chemie (V7N) | |||
| 16 | BO, CN, FO, HN, IL... (bm, bg, bn, bh, ab...) | (19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate | non-polymer | 689.9 | 20 | Chemie (0V9) | |||
| 17 | AK, BK, CK, ZJ (C) | HEME C | non-polymer | 618.5 | 4 | Chemie (HEC) | |||
| 18 | EK, FL (C, M) | (2~{S},3~{S},4~{S},5~{S})-4,5-diacetyloxy-3-oxidanyl-oxane-2-carboxylic acid | non-polymer | 262.2 | 2 | Chemie (V75) | |||
| 19 | FK, GK (C, C1) | 2-acetamido-2-deoxy-alpha-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NDG) | |||
| 20 | IK (H1) | (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate | non-polymer | 749.0 | 1 | Chemie (PGW) | |||
| 21 | AL, EL, KK, LL, QL... (M, H1, ad, af) | (2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate | non-polymer | 1241.6 | 6 | Chemie (CD4) | |||
| 22 | CL, MK (M, L) | BACTERIOPHEOPHYTIN A | non-polymer | 889.2 | 2 | Chemie (BPH) | |||
| 23 | EM, OK, XK (ao, L, M) | MENAQUINONE 8 | non-polymer | 717.1 | 3 | Chemie (MQ8) | |||
| 24 | WK (M) | FE (III) ION | non-polymer | 55.8 | 1 | Chemie (FE) | |||
| 25 | ZK (M) | SPIRILLOXANTHIN | non-polymer | 596.9 | 1 | Chemie (CRT) | |||
| 26 | PL, VL (af, ag) | [(2~{S})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]oxy-2-(12-methyltridecanoyloxy)propyl] 12-methyltridecanoate | non-polymer | 837.1 | 2 | Chemie (V7B) | |||
| 27 | YL (ai) | [(2~{S})-3-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-octadecanoyloxy-propyl] octadecanoate | non-polymer | 787.2 | 1 | Chemie (UYH) | |||
| 28 | AP, AQ, BP, BQ, CP... (AN, ai, AO, aj, AP...) | water | water | 18.0 | 406 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 87 |
| Total formula weight | 645207.1 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 652.6 | |
| Non-Polymers* | Number of molecules | 316 |
| Total formula weight | 218165.1 | |
| All* | Total formula weight | 864024.8 |
