7NXA
Crystal structure of the receptor binding domain of SARS-CoV-2 B.1.351 variant Spike glycoprotein in complex with COVOX-222 and EY6A Fabs
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | H | EY6A Fab heavy chain | polymer | 226 | 24346.3 | 1 | Homo sapiens | ||
2 | L | EY6A Fab light chain | polymer | 215 | 23315.9 | 1 | Homo sapiens | ||
3 | E | Spike protein S1 | polymer | 205 | 23185.0 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | |
4 | A | COVOX-222 Fab heavy chain | polymer | 224 | 23461.2 | 1 | Homo sapiens | ||
5 | B | COVOX-222 Fab light chain | polymer | 214 | 23327.9 | 1 | Homo sapiens | ||
6 | B, L, E, A | SULFATE ION | non-polymer | 96.1 | 19 | Chemie (SO4) | |||
7 | E, A | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
8 | E | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
9 | E | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 2 | Chemie (PEG) | |||
10 | water | water | 18.0 | 57 | Chemie (HOH) |
Sequence modifications
E: 333 - 528 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Glu 324 | - | expression tag |
Thr 325 | - | expression tag |
Gly 326 | - | expression tag |
His 327 | - | expression tag |
His 328 | - | expression tag |
His 329 | - | expression tag |
His 330 | - | expression tag |
His 331 | - | expression tag |
His 332 | - | expression tag |
Asn 417 | Lys 417 | variant |
Lys 484 | Glu 484 | variant |
Tyr 501 | Asn 501 | variant |
Lys 527 | Pro 527 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 117636.1 | |
Non-Polymers* | Number of molecules | 24 |
Total formula weight | 2442.8 | |
All* | Total formula weight | 120079.0 |