7NSJ
55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (B0) | Mitochondrial ribosomal protein L27 | polymer | 148 | 15943.7 | 1 | UniProt (F1RT79) UniProt (by SIFTS) (A0A4X1U0F6) | Sus scrofa (Pig) | |
| 2 | B (B1) | Mitochondrial ribosomal protein L28 | polymer | 256 | 30149.0 | 1 | UniProt (A0A286ZTW8) Pfam (PF00830) | Sus scrofa (Pig) | |
| 3 | C (B2) | Mitochondrial ribosomal protein L47 | polymer | 252 | 30085.1 | 1 | UniProt (F1SGC7) Pfam (PF06984) | Sus scrofa (Pig) | |
| 4 | D (B3) | uL30m | polymer | 161 | 18921.1 | 1 | UniProt (F1STE5) Pfam (PF00327) UniProt (by SIFTS) (A0A8D1MIP3) | Sus scrofa (Pig) | |
| 5 | E (B4) | bL31m | polymer | 126 | 15156.5 | 1 | UniProt (I3L9J0) Pfam (PF09776) UniProt (by SIFTS) (A0A4X1ULI6) | Sus scrofa (Pig) | |
| 6 | F (B5) | bL32m | polymer | 188 | 21537.9 | 1 | UniProt (I3LTC4) Pfam (PF01783) | Sus scrofa (Pig) | |
| 7 | G (B6) | bL33m | polymer | 65 | 7508.1 | 1 | UniProt (A0A286ZU68) Pfam (PF00471) UniProt (by SIFTS) (A0A4X1TLP9) | Sus scrofa (Pig) | |
| 8 | H (BB) | CP tRNAPhe | polymer | 73 | 23402.0 | 1 | GenBank (76262549) | Sus scrofa (Pig) | |
| 9 | I (B7) | Mitochondrial ribosomal protein L34 | polymer | 95 | 10871.7 | 1 | UniProt (A0A287A119) Pfam (PF00468) UniProt (by SIFTS) (A0A4X1UFR4) | Sus scrofa (Pig) | |
| 10 | J (BD) | uL2m | polymer | 306 | 33270.9 | 1 | UniProt (F1RRN2) Pfam (PF00181) | Sus scrofa (Pig) | |
| 11 | K (BE) | ICT1 | polymer | 399 | 43708.3 | 1 | UniProt (A0A140UHW4) Pfam (PF00297) | Sus scrofa (Pig) | Mitochondrial ribosomal protein L3 |
| 12 | L (BF) | Mitochondrial ribosomal protein L4 | polymer | 294 | 33251.5 | 1 | UniProt (A0A287B9C4) Pfam (PF00573) | Sus scrofa (Pig) | |
| 13 | M (BI) | Mitochondrial ribosomal protein L9 | polymer | 268 | 30373.4 | 1 | UniProt (I3LR45) Pfam (PF25131) Pfam (PF01281) Pfam (PF22078) | Sus scrofa (Pig) | |
| 14 | N (BJ) | Mitochondrial ribosomal protein L10 | polymer | 262 | 29449.7 | 1 | UniProt (F1RWJ0) Pfam (PF00466) | Sus scrofa (Pig) | |
| 15 | O (BK) | Mitochondrial ribosomal protein L11 | polymer | 192 | 20809.3 | 1 | UniProt (F1RU54) Pfam (PF00298) | Sus scrofa (Pig) | |
| 16 | P (BN) | uL13m | polymer | 178 | 20633.8 | 1 | UniProt (K7GP19) Pfam (PF00572) | Sus scrofa (Pig) | |
| 17 | Q (BO) | uL14m | polymer | 145 | 15955.6 | 1 | UniProt (A0A287BMZ6) Pfam (PF00238) | Sus scrofa (Pig) | |
| 18 | R (BP) | uL15m | polymer | 296 | 33481.7 | 1 | UniProt (F1RSH0) | Sus scrofa (Pig) | |
| 19 | S (BQ) | uL16m | polymer | 251 | 28680.5 | 1 | UniProt (F1RI89) Pfam (PF00252) | Sus scrofa (Pig) | |
| 20 | T (BR) | bL17m | polymer | 169 | 19268.2 | 1 | UniProt (F1RMQ4) Pfam (PF01196) | Sus scrofa (Pig) | |
| 21 | U (BS) | Mitochondrial ribosomal protein L18 | polymer | 180 | 20582.6 | 1 | UniProt (A0A286ZNK1) Pfam (PF00861) | Sus scrofa (Pig) | |
| 22 | V (BT) | Mitochondrial ribosomal protein L19 | polymer | 292 | 33441.5 | 1 | UniProt (I3LNJ0) Pfam (PF01245) | Sus scrofa (Pig) | |
| 23 | W (BU) | Mitochondrial ribosomal protein L20 | polymer | 149 | 17554.8 | 1 | UniProt (A0A286ZU56) Pfam (PF00453) | Sus scrofa (Pig) | |
| 24 | X (BV) | Mitochondrial ribosomal protein L21 | polymer | 209 | 23154.9 | 1 | UniProt (F1RY70) Pfam (PF00829) | Sus scrofa (Pig) | |
| 25 | Y (BW) | uL22m | polymer | 210 | 24313.4 | 1 | UniProt (F1RQC9) Pfam (PF00237) UniProt (by SIFTS) (A0A4X1TXR4) | Sus scrofa (Pig) | |
| 26 | Z (BX) | uL23m | polymer | 150 | 17643.2 | 1 | UniProt (A0A286ZZC6) | Sus scrofa (Pig) | |
| 27 | AA (BY) | uL24m | polymer | 216 | 24893.5 | 1 | UniProt (F1RHJ1) Pfam (PF00467) Pfam (PF17136) | Sus scrofa (Pig) | |
| 28 | BA (Ba) | Mitochondrial ribosomal protein L37 | polymer | 423 | 47918.0 | 1 | UniProt (A0A287BIV6) Pfam (PF07147) | Sus scrofa (Pig) | |
| 29 | CA (Bb) | Mitochondrial ribosomal protein L38 | polymer | 380 | 44656.4 | 1 | UniProt (F1RW03) Pfam (PF01161) | Sus scrofa (Pig) | |
| 30 | DA (Bc) | Mitochondrial ribosomal protein L39 | polymer | 334 | 38523.4 | 1 | UniProt (F1SHP6) | Sus scrofa (Pig) | |
| 31 | EA (Bd) | Mitochondrial ribosomal protein L40 | polymer | 206 | 24075.7 | 1 | UniProt (A0A5G2R2V2) Pfam (PF09812) | Sus scrofa (Pig) | |
| 32 | FA (Be) | Mitochondrial ribosomal protein L41 | polymer | 135 | 15073.4 | 1 | UniProt (A0A287AWS0) Pfam (PF09809) UniProt (by SIFTS) (A0A8D1F1K9) | Sus scrofa (Pig) | |
| 33 | GA (Bf) | mL42 | polymer | 142 | 16680.2 | 1 | UniProt (A0A287BQA1) Pfam (PF10210) | Sus scrofa (Pig) | |
| 34 | HA (Bg) | Mitochondrial ribosomal protein L43 | polymer | 159 | 17728.1 | 1 | UniProt (F1S8U4) | Sus scrofa (Pig) | |
| 35 | IA (Bh) | mL44 | polymer | 332 | 37527.2 | 1 | UniProt (F1SR64) Pfam (PF22935) Pfam (PF22892) | Sus scrofa (Pig) | |
| 36 | JA (B8) | Mitochondrial ribosomal protein L35 | polymer | 188 | 21548.5 | 1 | UniProt (F1SVC5) | Sus scrofa (Pig) | |
| 37 | KA (Bi) | Mitochondrial ribosomal protein L45 | polymer | 306 | 35331.8 | 1 | UniProt (I3LGM5) Pfam (PF04280) | Sus scrofa (Pig) | |
| 38 | LA (Bj) | Mitochondrial ribosomal protein L46 | polymer | 279 | 32216.0 | 1 | UniProt (F1SRT0) Pfam (PF11788) | Sus scrofa (Pig) | |
| 39 | MA (Bk) | 39S ribosomal protein L48, mitochondrial | polymer | 269 | 29942.5 | 1 | UniProt (A0A480J9Z6) Pfam (PF00338) | Sus scrofa (Pig) | 39S ribosomal protein L48,mitochondrial isoform 1,Mitochondrial ribosomal protein L48 |
| 40 | NA (Bl) | Mrpl34 | polymer | 166 | 18957.8 | 1 | UniProt (A0A0R4J8D6) Pfam (PF05046) | Sus scrofa (Pig) | |
| 41 | OA (Bm) | Mitochondrial ribosomal protein L50 | polymer | 198 | 22785.4 | 1 | UniProt (I3L9H6) Pfam (PF10501) | Sus scrofa (Pig) | |
| 42 | PA (Bn) | Mitochondrial ribosomal protein L51 | polymer | 128 | 15249.0 | 1 | UniProt (A0A287BE26) Pfam (PF10244) UniProt (by SIFTS) (A0A8D1P1C8) | Sus scrofa (Pig) | |
| 43 | QA (Bo) | mL52 | polymer | 124 | 13813.7 | 1 | UniProt (F1S9B7) Pfam (PF18699) | Sus scrofa (Pig) | |
| 44 | RA (Bp) | mL53 | polymer | 112 | 12015.7 | 1 | UniProt (A0A341D604) Pfam (PF10780) | Sus scrofa (Pig) | |
| 45 | SA (Bq) | mL54 | polymer | 138 | 15957.4 | 1 | UniProt (I3LN63) Pfam (PF08561) | Sus scrofa (Pig) | |
| 46 | TA (Bt) | Mitochondrial ribosomal protein L57 | polymer | 102 | 12001.9 | 1 | UniProt (A0A287BP93) Pfam (PF14978) | Sus scrofa (Pig) | |
| 47 | UA (Bu) | mL62 (ICT1) | polymer | 205 | 23545.9 | 1 | UniProt (A0A286ZJR2) Pfam (PF00472) | Sus scrofa (Pig) | |
| 48 | VA (Bv) | mL64 | polymer | 222 | 25815.0 | 1 | UniProt (A0A286ZXA6) Pfam (PF10147) | Sus scrofa (Pig) | |
| 49 | WA (Bw) | 39S ribosomal protein S30, mitochondrial | polymer | 433 | 49100.5 | 1 | UniProt (A0A480QIM3) Pfam (PF07147) | Sus scrofa (Pig) | Mitochondrial ribosomal protein S30 |
| 50 | XA (Bx) | Mitochondrial ribosomal protein S18A | polymer | 196 | 22273.1 | 1 | UniProt (F1RRH6) Pfam (PF01084) | Sus scrofa (Pig) | |
| 51 | YA (AA) | 12S rRNA | polymer | 962 | 308989.1 | 1 | GenBank (11055671) | Sus scrofa (Pig) | |
| 52 | ZA (B9) | Ribosomal protein | polymer | 100 | 10841.0 | 1 | UniProt (A0A287A731) Pfam (PF00444) | Sus scrofa (Pig) | |
| 53 | AB (BA) | 16S rRNA | polymer | 1571 | 504852.0 | 1 | GenBank (33320725) | Sus scrofa (Pig) | |
| 54 | BB (AB) | Mitochondrial ribosomal protein S2 | polymer | 289 | 31731.6 | 1 | UniProt (F1S001) Pfam (PF00318) | Sus scrofa (Pig) | |
| 55 | CB (AC) | Mitochondrial ribosomal protein S24 | polymer | 167 | 18935.2 | 1 | UniProt (A0A287ANU4) Pfam (PF14955) | Sus scrofa (Pig) | |
| 56 | DB (AE) | 28S ribosomal protein S5, mitochondrial isoform X2 | polymer | 430 | 48213.1 | 1 | UniProt (F1SU66) Pfam (PF21251) Pfam (PF00333) Pfam (PF03719) | Sus scrofa (Pig) | Mitochondrial ribosomal protein S5 |
| 57 | EB (AF) | bS6m | polymer | 276 | 30365.3 | 1 | UniProt (I3LEJ9) | Sus scrofa (Pig) | |
| 58 | FB (AG) | Mitochondrial ribosomal protein S7 | polymer | 242 | 28150.9 | 1 | UniProt (A0A286ZJ25) Pfam (PF00177) | Sus scrofa (Pig) | |
| 59 | GB (AI) | uS9m | polymer | 397 | 45604.6 | 1 | UniProt (I3LU08) Pfam (PF00380) | Sus scrofa (Pig) | |
| 60 | HB (AJ) | Mitochondrial ribosomal protein S10 | polymer | 200 | 23105.7 | 1 | UniProt (F1RUU2) Pfam (PF00338) | Sus scrofa (Pig) | |
| 61 | IB (AK) | uS11m | polymer | 196 | 20841.9 | 1 | UniProt (A0A286ZJJ6) Pfam (PF00411) | Sus scrofa (Pig) | |
| 62 | JB (AL) | Mitochondrial ribosomal protein S12 | polymer | 139 | 15257.1 | 1 | UniProt (A0A0M3KL52) | Sus scrofa (Pig) | Mitoribosomal protein us12m,mrps12 |
| 63 | KB (AN) | Mitochondrial ribosomal protein S14 | polymer | 128 | 15120.7 | 1 | UniProt (A0A0M3KL53) Pfam (PF00253) | Sus scrofa (Pig) | Mitoribosomal protein us14m,mrps14 |
| 64 | LB (AO) | uS15m | polymer | 239 | 27411.4 | 1 | UniProt (A0A287BMP0) Pfam (PF00312) | Sus scrofa (Pig) | |
| 65 | MB (AP) | 28S ribosomal protein S16, mitochondrial | polymer | 135 | 15182.7 | 1 | UniProt (A0A480JTD7) | Sus scrofa (Pig) | Mitochondrial ribosomal protein S16 |
| 66 | NB (AQ) | uS17m | polymer | 130 | 14452.0 | 1 | UniProt (F1RIU0) Pfam (PF00366) UniProt (by SIFTS) (A0A8D1UDM1) | Sus scrofa (Pig) | |
| 67 | OB (AR) | Mitochondrial ribosomal protein S18C | polymer | 143 | 16211.1 | 1 | UniProt (A0A0M3KL54) Pfam (PF01084) | Sus scrofa (Pig) | Mitoribosomal protein bs18m,mrps18c |
| 68 | PB (AU) | bS21m | polymer | 87 | 10682.5 | 1 | UniProt (A0A286ZNB3) Pfam (PF01165) | Sus scrofa (Pig) | |
| 69 | QB (AZ) | unknown | polymer | 18 | 1549.9 | 1 | Sus scrofa (Pig) | ||
| 70 | RB (Aa) | Mitochondrial ribosomal protein S22 | polymer | 382 | 43234.6 | 1 | UniProt (A0A287AQT5) Pfam (PF10245) | Sus scrofa (Pig) | |
| 71 | SB (Ab) | mS23 | polymer | 190 | 21666.7 | 1 | UniProt (A0A287AEW3) Pfam (PF10484) | Sus scrofa (Pig) | |
| 72 | TB (Ac) | Mitochondrial ribosomal protein S25 | polymer | 173 | 19954.2 | 1 | UniProt (A0A0M3KL55) Pfam (PF05047) | Sus scrofa (Pig) | Mitoribosomal protein ms25,mrps25 |
| 73 | UB (Ad) | Mitochondrial ribosomal protein S26 | polymer | 205 | 23637.9 | 1 | UniProt (A0A287AY01) | Sus scrofa (Pig) | |
| 74 | VB (Ae) | Mitochondrial ribosomal protein S27 | polymer | 455 | 51946.0 | 1 | UniProt (A0A5G2R5D6) Pfam (PF10037) | Sus scrofa (Pig) | |
| 75 | WB (Af) | Mitoribosomal protein ms28, mrps28 | polymer | 188 | 21014.9 | 1 | UniProt (A0A0M3KL56) Pfam (PF10246) | Sus scrofa (Pig) | |
| 76 | XB (Ag) | Death associated protein 3 | polymer | 410 | 46966.1 | 1 | UniProt (I3LS10) Pfam (PF10236) UniProt (by SIFTS) (A0A8D1XNL0) | Sus scrofa (Pig) | |
| 77 | YB (Ah) | 28S ribosomal protein S31, mitochondrial | polymer | 387 | 44092.0 | 1 | UniProt (A0A4X1SQW0) | Sus scrofa (Pig) | |
| 78 | ZB (Ai) | mS33 | polymer | 106 | 12544.6 | 1 | UniProt (F1S8G3) Pfam (PF08293) UniProt (by SIFTS) (A0A4X1V2H3) | Sus scrofa (Pig) | |
| 79 | AC (Aj) | mS34 | polymer | 218 | 25843.8 | 1 | UniProt (A0A287AVS9) Pfam (PF16053) | Sus scrofa (Pig) | |
| 80 | BC (Ak) | Mitochondrial ribosomal protein S35 | polymer | 325 | 37104.8 | 1 | UniProt (F1SG95) Pfam (PF10213) | Sus scrofa (Pig) | |
| 81 | CC (Am) | mS37 | polymer | 118 | 13561.9 | 1 | UniProt (F1SU49) Pfam (PF06747) UniProt (by SIFTS) (A0A4X1SZV4) | Sus scrofa (Pig) | |
| 82 | DC (An) | Aurora kinase A interacting protein 1 | polymer | 199 | 22843.9 | 1 | UniProt (A0A287B3R8) Pfam (PF08213) UniProt (by SIFTS) (A0A8D2A802) | Sus scrofa (Pig) | |
| 83 | EC (Ao) | Pentatricopeptide repeat domain 3,Pentatricopeptide repeat domain 3,Pentatricopeptide repeat domain 3,Pentatricopeptide repeat domain 3,mS39,Pentatricopeptide repeat domain 3,Pentatricopeptide repeat domain 3,Pentatricopeptide repeat domain 3,Pentatricopeptide repeat domain 3 | polymer | 690 | 76524.6 | 1 | UniProt (F1SVC4) Pfam (PF22330) Pfam (PF13812) | Sus scrofa (Pig) | |
| 84 | FC (Ap) | 28S ribosomal protein S18b, mitochondrial | polymer | 258 | 29220.5 | 1 | UniProt (Q767K8) Pfam (PF01084) | Sus scrofa (Pig) | S18mt-b,28S ribosomal protein S18-2,mitochondrial,MRP-S18-2 |
| 85 | GC, HC, IC, JC, KC... (CL, DL, EL, FL, GL...) | Mitochondrial ribosomal protein L12 | polymer | 198 | 21269.0 | 6 | UniProt (A0A287ARV8) Pfam (PF16320) Pfam (PF00542) UniProt (by SIFTS) (A0A4X1U6S6) | Sus scrofa (Pig) | |
| 86 | MC, OC (AV, AY) | tRNA(P/P) and tRNA(E*) | polymer | 71 | 21713.9 | 2 | Sus scrofa (Pig) | ||
| 87 | NC (AX) | mRNA | polymer | 6 | 1792.0 | 1 | Sus scrofa (Pig) | ||
| 88 | AD, AE, AF, AG, AH... (Be, AA, BA, Bl, Bt...) | MAGNESIUM ION | non-polymer | 24.3 | 324 | Chemie (MG) PubChem (888) | |||
| 89 | ED, EH, FP, GP, LP... (Bx, B9, AR, Ac, Ap...) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) | |||
| 90 | FD, OO, PO (AA, BA) | SPERMINE | non-polymer | 202.3 | 3 | Chemie (SPM) PubChem (1103) | |||
| 91 | NO (BA) | GUANOSINE-5'-MONOPHOSPHATE | non-polymer | 363.2 | 1 | Chemie (5GP) | |||
| 92 | HP (Ag) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) PubChem (177679032) PubChem (135400627) PubChem (135487750) PubChem (136088935) PubChem (136803486) PubChem (135398633) PubChem (135544356) PubChem (135547949) PubChem (135600366) PubChem (135749822) PubChem (136005188) PubChem (136073923) PubChem (136240914) PubChem (136664747) PubChem (136772743) PubChem (136772744) PubChem (136803487) PubChem (137286749) PubChem (164715984) PubChem (171699466) | |||
| 93 | MP (Ag) | water | water | 18.0 | 3 | Chemie (HOH) |
Sequence modifications
BB: 1 - 73 (GenBank: 76262549)
BQ: 1 - 251 (UniProt: F1RI89)
Bl: 1 - 166 (UniProt: A0A0R4J8D6)
Bp: 1 - 112 (UniProt: A0A341D604)
Ah: 1 - 387 (UniProt: A0A4X1SQW0)
Ao: 3 - 163 (UniProt: F1SVC4)
Ao: 163 - 234 (PDB: 7NSJ)
Ao: 240 - 692 (UniProt: F1SVC4)
| PDB | External Database | Details |
|---|---|---|
| C 71 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| His 237 | Tyr 237 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 59 | Lys 59 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 12 | Ser 12 | conflict |
| Ser 107 | Gly 107 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Thr 133 | Ala 133 | conflict |
| Arg 179 | Lys 179 | conflict |
| Unk 180 | Ala 180 | conflict |
Ao: 163 - 234 (PDB: 7NSJ)
Ao: 240 - 692 (UniProt: F1SVC4)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 93 |
| Total formula weight | 3087266.6 | |
| Non-Polymers* | Number of molecules | 335 |
| Total formula weight | 9760.7 | |
| All* | Total formula weight | 3097027.3 |
