7NSH

39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	B0	Mitochondrial ribosomal protein L27	polymer	148	15943.7	1	UniProt (F1RT79) Pfam (PF01016) UniProt (by SIFTS) (A0A4X1U0F6) In PDB	Sus scrofa (Pig)
2	BY	uL24m	polymer	216	24893.5	1	UniProt (F1RHJ1) Pfam (PF00467) Pfam (PF17136) In PDB	Sus scrofa (Pig)
3	Ba	Mitochondrial ribosomal protein L37	polymer	423	47918.0	1	UniProt (A0A287BIV6) Pfam (PF07147) In PDB	Sus scrofa (Pig)
4	B8	Mitochondrial ribosomal protein L35	polymer	188	21548.5	1	UniProt (F1SVC5) In PDB	Sus scrofa (Pig)
5	Bb	Mitochondrial ribosomal protein L38	polymer	380	44656.4	1	UniProt (F1RW03) Pfam (PF01161) In PDB	Sus scrofa (Pig)
6	Bc	Mitochondrial ribosomal protein L39	polymer	334	38523.4	1	UniProt (F1SHP6) In PDB	Sus scrofa (Pig)
7	Bd	Mitochondrial ribosomal protein L40	polymer	206	24075.7	1	UniProt (A0A5G2R2V2) Pfam (PF09812) In PDB	Sus scrofa (Pig)
8	Be	Mitochondrial ribosomal protein L41	polymer	135	15073.4	1	UniProt (A0A287AWS0) Pfam (PF09809) UniProt (by SIFTS) (A0A8D1F1K9) In PDB	Sus scrofa (Pig)
9	Bf	mL42	polymer	142	16680.2	1	UniProt (A0A287BQA1) Pfam (PF10210) In PDB	Sus scrofa (Pig)
10	Bg	Mitochondrial ribosomal protein L43	polymer	159	17728.1	1	UniProt (F1S8U4) Pfam (PF05047) In PDB	Sus scrofa (Pig)
11	Bh	mL44	polymer	332	37527.2	1	UniProt (F1SR64) Pfam (PF22935) Pfam (PF22892) In PDB	Sus scrofa (Pig)
12	Bi	Mitochondrial ribosomal protein L45	polymer	306	35331.8	1	UniProt (I3LGM5) Pfam (PF04280) In PDB	Sus scrofa (Pig)
13	Bj	Mitochondrial ribosomal protein L46	polymer	279	32216.0	1	UniProt (F1SRT0) Pfam (PF11788) In PDB	Sus scrofa (Pig)
14	Bk	39S ribosomal protein L48, mitochondrial	polymer	269	29942.5	1	UniProt (A0A480J9Z6) Pfam (PF00338) In PDB	Sus scrofa (Pig)	39S ribosomal protein L48,mitochondrial isoform 1,Mitochondrial ribosomal protein L48
15	Bl	Mrpl34	polymer	166	18957.8	1	UniProt (A0A0R4J8D6) Pfam (PF05046) In PDB	Sus scrofa (Pig)
16	Bm	Mitochondrial ribosomal protein L50	polymer	198	22785.4	1	UniProt (I3L9H6) Pfam (PF10501) In PDB	Sus scrofa (Pig)
17	Bn	Mitochondrial ribosomal protein L51	polymer	128	15249.0	1	UniProt (A0A287BE26) Pfam (PF10244) UniProt (by SIFTS) (A0A8D1P1C8) In PDB	Sus scrofa (Pig)
18	Bo	mL52	polymer	124	13813.7	1	UniProt (F1S9B7) Pfam (PF18699) In PDB	Sus scrofa (Pig)
19	Bp	mL53	polymer	112	12015.7	1	UniProt (A0A341D604) Pfam (PF10780) In PDB	Sus scrofa (Pig)
20	Bq	mL54	polymer	138	15957.4	1	UniProt (I3LN63) Pfam (PF08561) In PDB	Sus scrofa (Pig)
21	Bt	Mitochondrial ribosomal protein L57	polymer	102	12001.9	1	UniProt (A0A287BP93) Pfam (PF14978) In PDB	Sus scrofa (Pig)
22	Bu	mL62 (ICT1)	polymer	205	23545.9	1	UniProt (A0A286ZJR2) Pfam (PF00472) In PDB	Sus scrofa (Pig)
23	Bv	mL64	polymer	222	25815.0	1	UniProt (A0A286ZXA6) Pfam (PF10147) In PDB	Sus scrofa (Pig)
24	Bw	39S ribosomal protein S30, mitochondrial	polymer	433	49100.5	1	UniProt (A0A480QIM3) Pfam (PF07147) In PDB	Sus scrofa (Pig)	Mitochondrial ribosomal protein S30
25	Bx	Mitochondrial ribosomal protein S18A	polymer	196	22273.1	1	UniProt (F1RRH6) Pfam (PF01084) In PDB	Sus scrofa (Pig)
26	CL, DL, EL, FL, GL...	Mitochondrial ribosomal protein L12	polymer	198	21269.0	7	UniProt (A0A287ARV8) Pfam (PF16320) Pfam (PF00542) UniProt (by SIFTS) (A0A4X1U6S6) In PDB	Sus scrofa (Pig)
27	B1	Mitochondrial ribosomal protein L28	polymer	256	30149.0	1	UniProt (A0A286ZTW8) Pfam (PF00830) In PDB	Sus scrofa (Pig)
28	B9	Ribosomal protein	polymer	100	10841.0	1	UniProt (A0A287A731) Pfam (PF00444) In PDB	Sus scrofa (Pig)
29	BA	16S rRNA	polymer	1571	504852.0	1	GenBank (33320725)	Sus scrofa (Pig)
30	B2	Mitochondrial ribosomal protein L47	polymer	252	30085.1	1	UniProt (F1SGC7) Pfam (PF06984) In PDB	Sus scrofa (Pig)
31	B3	uL30m	polymer	161	18921.1	1	UniProt (F1STE5) Pfam (PF00327) UniProt (by SIFTS) (A0A8D1MIP3) In PDB	Sus scrofa (Pig)
32	B4	bL31m	polymer	126	15156.5	1	UniProt (I3L9J0) Pfam (PF09776) UniProt (by SIFTS) (A0A4X1ULI6) In PDB	Sus scrofa (Pig)
33	B5	bL32m	polymer	188	21537.9	1	UniProt (I3LTC4) Pfam (PF01783) In PDB	Sus scrofa (Pig)
34	B6	bL33m	polymer	65	7508.1	1	UniProt (A0A286ZU68) Pfam (PF00471) UniProt (by SIFTS) (A0A4X1TLP9) In PDB	Sus scrofa (Pig)
35	B7	Mitochondrial ribosomal protein L34	polymer	95	10871.7	1	UniProt (A0A287A119) Pfam (PF00468) UniProt (by SIFTS) (A0A4X1UFR4) In PDB	Sus scrofa (Pig)
36	BB	CP tRNAPhe	polymer	73	23402.0	1	GenBank (76262549)	Sus scrofa (Pig)
37	BC	Ribosome-releasing factor 2, mitochondrial	polymer	755	83848.7	1	UniProt (Q969S9) Pfam (PF00009) Pfam (PF22042) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679) In PDB	Homo sapiens (Human)	RRF2mt,Elongation factor G 2,mitochondrial,EF-G2mt,mEF-G 2,Elongation factor G2,hEFG2
38	BD	uL2m	polymer	306	33270.9	1	UniProt (F1RRN2) Pfam (PF00181) In PDB	Sus scrofa (Pig)
39	BG	Ribosome-recycling factor, mitochondrial	polymer	257	28690.0	1	UniProt (Q96E11) Pfam (PF01765) In PDB	Homo sapiens (Human)	RRF,Ribosome-releasing factor,mitochondrial
40	BQ	uL16m	polymer	251	28680.5	1	UniProt (F1RI89) Pfam (PF00252) In PDB	Sus scrofa (Pig)
41	BE	ICT1	polymer	399	43708.3	1	UniProt (A0A140UHW4) Pfam (PF00297) In PDB	Sus scrofa (Pig)	Mitochondrial ribosomal protein L3
42	BF	Mitochondrial ribosomal protein L4	polymer	294	33251.5	1	UniProt (A0A287B9C4) Pfam (PF00573) In PDB	Sus scrofa (Pig)
43	BI	Mitochondrial ribosomal protein L9	polymer	268	30373.4	1	UniProt (I3LR45) Pfam (PF01281) Pfam (PF22078) In PDB	Sus scrofa (Pig)
44	BJ	Mitochondrial ribosomal protein L10	polymer	262	29449.7	1	UniProt (F1RWJ0) Pfam (PF00466) In PDB	Sus scrofa (Pig)
45	BK	Mitochondrial ribosomal protein L11	polymer	192	20809.3	1	UniProt (F1RU54) Pfam (PF00298) In PDB	Sus scrofa (Pig)
46	BN	uL13m	polymer	178	20633.8	1	UniProt (K7GP19) Pfam (PF00572) In PDB	Sus scrofa (Pig)
47	BO	uL14m	polymer	145	15955.6	1	UniProt (A0A287BMZ6) Pfam (PF00238) In PDB	Sus scrofa (Pig)
48	BP	uL15m	polymer	296	33481.7	1	UniProt (F1RSH0) In PDB	Sus scrofa (Pig)
49	BR	bL17m	polymer	169	19268.2	1	UniProt (F1RMQ4) Pfam (PF01196) In PDB	Sus scrofa (Pig)
50	BS	Mitochondrial ribosomal protein L18	polymer	180	20582.6	1	UniProt (A0A286ZNK1) Pfam (PF00861) In PDB	Sus scrofa (Pig)
51	BT	Mitochondrial ribosomal protein L19	polymer	292	33441.5	1	UniProt (I3LNJ0) Pfam (PF01245) In PDB	Sus scrofa (Pig)
52	BU	Mitochondrial ribosomal protein L20	polymer	149	17554.8	1	UniProt (A0A286ZU56) Pfam (PF00453) In PDB	Sus scrofa (Pig)
53	BV	Mitochondrial ribosomal protein L21	polymer	209	23154.9	1	UniProt (F1RY70) Pfam (PF00829) In PDB	Sus scrofa (Pig)
54	BW	uL22m	polymer	210	24313.4	1	UniProt (F1RQC9) Pfam (PF00237) UniProt (by SIFTS) (A0A4X1TXR4) In PDB	Sus scrofa (Pig)
55	BX	uL23m	polymer	150	17643.2	1	UniProt (A0A286ZZC6) In PDB	Sus scrofa (Pig)
56	BA, BJ, BP, BR, B0...	MAGNESIUM ION	non-polymer		24.3	221	Chemie (MG)
57	Bx, B9, B5	ZINC ION	non-polymer		65.4	3	Chemie (ZN)
58	BA	GUANOSINE-5'-MONOPHOSPHATE	non-polymer		363.2	2	Chemie (5GP)
59	BA	SPERMINE	non-polymer		202.3	2	Chemie (SPM)
60	BC	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER	non-polymer		522.2	1	Chemie (GNP)
61		water	water		18.0	2	Chemie (HOH)

Sequence modifications

Bl: 1 - 166 (UniProt: A0A0R4J8D6)

PDB	External Database	Details
Arg 59	Lys 59	conflict

Bp: 1 - 112 (UniProt: A0A341D604)

PDB	External Database	Details
Ala 12	Ser 12	conflict
Ser 107	Gly 107	conflict

BB: 1 - 73 (GenBank: 76262549)

PDB	External Database	Details
C 71	-	insertion

BC: 45 - 779 (UniProt: Q969S9)

PDB	External Database	Details
Met 25	-	initiating methionine
His 26	-	expression tag
His 27	-	expression tag
His 28	-	expression tag
His 29	-	expression tag
His 30	-	expression tag
His 31	-	expression tag
Glu 32	-	expression tag
Asn 33	-	expression tag
Leu 34	-	expression tag
Tyr 35	-	expression tag
Phe 36	-	expression tag
Gln 37	-	expression tag
Ser 38	-	expression tag
Gly 39	-	expression tag
Gly 40	-	expression tag
Ser 41	-	expression tag
Gly 42	-	expression tag
Ser 43	-	expression tag
Gly 44	-	expression tag

BG: 26 - 262 (UniProt: Q96E11)

PDB	External Database	Details
Met 6	-	initiating methionine
His 7	-	expression tag
His 8	-	expression tag
His 9	-	expression tag
His 10	-	expression tag
His 11	-	expression tag
His 12	-	expression tag
Glu 13	-	expression tag
Asn 14	-	expression tag
Leu 15	-	expression tag
Tyr 16	-	expression tag
Phe 17	-	expression tag
Gln 18	-	expression tag
Ser 19	-	expression tag
Gly 20	-	expression tag
Gly 21	-	expression tag
Ser 22	-	expression tag
Gly 23	-	expression tag
Ser 24	-	expression tag
Gly 25	-	expression tag

BQ: 1 - 251 (UniProt: F1RI89)

PDB	External Database	Details
His 237	Tyr 237	conflict

Contents of the asymmetric unit

Polymers	Number of chains	61
	Total formula weight	2013893.1
Non-Polymers*	Number of molecules	229
	Total formula weight	7220.9
All*	Total formula weight	2021114.0

*Water molecules are not included.