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7NRD

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1S2TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequencepolymer1800579761.91Saccharomyces cerevisiae S288C
2SA40S ribosomal protein S3polymer22324702.81UniProt (P05750)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP13,Small ribosomal subunit protein uS3,YS3
3SB40S ribosomal protein S5polymer20622908.31UniProt (P26783)
Pfam (PF00177)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP14,S2,Small ribosomal subunit protein uS7,YS8
4SC40S ribosomal protein S10-Apolymer9211042.61UniProt (Q08745)
Pfam (PF03501)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Small ribosomal subunit protein eS10-A
5SD40S ribosomal protein S12polymer12413327.31UniProt (P48589)
Pfam (PF01248)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Small ribosomal subunit protein eS12
6SE40S ribosomal protein S15polymer11913421.71UniProt (Q01855)
Pfam (PF00203)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21
7SF40S ribosomal protein S16-Apolymer14115659.21UniProt (P0CX51)
Pfam (PF00380)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP61R,Small ribosomal subunit protein uS9-A
8SG40S ribosomal protein S17-Bpolymer12514268.51UniProt (P14127)
Pfam (PF00833)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP51B,Small ribosomal subunit protein eS17-B
9SH40S ribosomal protein S18-Apolymer14516940.41UniProt (P0CX55)
Pfam (PF00416)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Small ribosomal subunit protein uS13-A
10SI40S ribosomal protein S19-Apolymer14315810.91UniProt (P07280)
Pfam (PF01090)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A
11SJ40S ribosomal protein S20polymer10111476.51UniProt (P38701)
Pfam (PF00338)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Small ribosomal subunit protein uS10
12SK40S ribosomal protein S25-Apolymer697930.31UniProt (Q3E792)
Pfam (PF03297)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP45,S31,Small ribosomal subunit protein eS25-A,YS23
13SL40S ribosomal protein S28-Apolymer637116.31UniProt (Q3E7X9)
Pfam (PF01200)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)S33,Small ribosomal subunit protein eS28-A,YS27
14SM40S ribosomal protein S29-Apolymer536335.31UniProt (P41057)
Pfam (PF00253)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)S36,Small ribosomal subunit protein uS14-A,YS29
15SNUbiquitin-40S ribosomal protein S31polymer738329.91UniProt (P05759)
Pfam (PF01599)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)
16SOGuanine nucleotide-binding protein subunit beta-like proteinpolymer31334151.41UniProt (P38011)
Pfam (PF00400)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1
17SP40S ribosomal protein S0-Apolymer20622811.11UniProt (P32905)
Pfam (PF00318)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Nucleic acid-binding protein NAB1A,Small ribosomal subunit protein uS2-A
18SQ40S ribosomal protein S1-Apolymer21624498.41UniProt (P33442)
Pfam (PF01015)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP10A,Small ribosomal subunit protein eS1-A
19SR40S ribosomal protein S2polymer21723213.01UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Omnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5
20SS40S ribosomal protein S4-Apolymer26029338.11UniProt (P0CX35)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP5,S7,Small ribosomal subunit protein eS4-A,YS6
21ST40S ribosomal protein S6-Apolymer21824966.01UniProt (P0CX37)
Pfam (PF01092)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP9,S10,Small ribosomal subunit protein eS6-A,YS4
22SU40S ribosomal protein S7-Apolymer18521071.61UniProt (P26786)
Pfam (PF01251)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP30,RP40,Small ribosomal subunit protein eS7-A
23SV40S ribosomal protein S8-Apolymer18821147.21UniProt (P0CX39)
Pfam (PF01201)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP19,S14,Small ribosomal subunit protein eS8-A,YS9
24SW40S ribosomal protein S9-Apolymer18521210.71UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11
25SX40S ribosomal protein S11-Apolymer14616588.51UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP41,S18,Small ribosomal subunit protein uS17-A,YS12
26SY40S ribosomal protein S13polymer15016928.71UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)S27a,Small ribosomal subunit protein uS15,YS15
27SZ40S ribosomal protein S14-Bpolymer12813560.51UniProt (P39516)
Pfam (PF00411)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP59B,Small ribosomal subunit protein uS11-B
28Sa40S ribosomal protein S21-Apolymer879758.81UniProt (P0C0V8)
Pfam (PF01249)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)S26,Small ribosomal subunit protein eS21-A,YS25
29Sb40S ribosomal protein S22-Apolymer12914518.91UniProt (P0C0W1)
Pfam (PF00410)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22
30Sc40S ribosomal protein S23-Apolymer14415942.71UniProt (P0CX29)
Pfam (PF00164)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP37,S28,Small ribosomal subunit protein uS12-A,YS14
31Sd40S ribosomal protein S24-Apolymer13415231.61UniProt (P0CX31)
Pfam (PF01282)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP50,Small ribosomal subunit protein eS24-A
32Se40S ribosomal protein S26-Bpolymer9711023.01UniProt (P39939)
Pfam (PF01283)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Small ribosomal subunit protein eS26-B
33Sf40S ribosomal protein S27-Apolymer818762.21UniProt (P35997)
Pfam (PF01667)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)RP61,Small ribosomal subunit protein eS27-A,YS20
34Sg40S ribosomal protein S30-Apolymer445054.11UniProt (P0CX33)
Pfam (PF04758)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Small ribosomal subunit protein eS30-A
35ShMultiprotein-bridging factor 1polymer12013247.11UniProt (O14467)
Pfam (PF08523)
Pfam (PF01381)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Suppressor of frameshift mutations protein 13
36S3mRNA (32-MER)polymer329885.71Saccharomyces cerevisiae S288c
37SntRNA (75-MER)polymer7524222.51GenBank (176433)Saccharomyces cerevisiae S288C (Baker's yeast)
38SmtRNA (77-MER)polymer7724802.81Saccharomyces cerevisiae S288c
39LA25S rRNA (3184-MER)polymer33941096842.41GenBank (831416132)Saccharomyces cerevisiae S288C
40LB5S rRNA (121-MER)polymer12138951.11GenBank (834774822)Saccharomyces cerevisiae S288c
41LC5.8S rRNA (158-MER)polymer15850682.91GenBank (940534893)Saccharomyces cerevisiae S288c
42LD60S ribosomal protein L2-Apolymer25127089.21UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L5,Large ribosomal subunit protein uL2-A,RP8,YL6
43LE60S ribosomal protein L3polymer38643719.61UniProt (P14126)
Pfam (PF00297)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
44LF60S ribosomal protein L4-Apolymer36139027.91UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L2,Large ribosomal subunit protein uL4-A,RP2,YL2
45LG60S ribosomal protein L5polymer29433415.41UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
46LH60S ribosomal protein L6-Bpolymer16718935.31UniProt (P05739)
Pfam (PF01159)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L17,Large ribosomal subunit protein eL6-B,RP18,YL16
47LI60S ribosomal protein L7-Apolymer22225240.41UniProt (P05737)
Pfam (PF00327)
Pfam (PF08079)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
48LJ60S ribosomal protein L8-Apolymer23325815.01UniProt (P17076)
Pfam (PF01248)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
49LK60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L8,Large ribosomal subunit protein uL6-A,RP24,YL11
50LL60S ribosomal protein L10polymer21825080.11UniProt (P41805)
Pfam (PF00252)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
51LM60S ribosomal protein L11-Bpolymer16919266.11UniProt (Q3E757)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L16,Large ribosomal subunit protein uL5-B,RP39,YL22
52LN60S ribosomal protein L13-Apolymer19321885.21UniProt (Q12690)
Pfam (PF01294)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL13-A
53LO60S ribosomal protein L14-Apolymer13614976.81UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL14-A
54LP60S ribosomal protein L15-Apolymer20324351.21UniProt (P05748)
Pfam (PF00827)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
55LQ60S ribosomal protein L16-Apolymer19722029.01UniProt (P26784)
Pfam (PF00572)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
56LR60S ribosomal protein L17-Apolymer18320458.31UniProt (P05740)
Pfam (PF00237)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
57LS60S ribosomal protein L18-Apolymer18520478.11UniProt (P0CX49)
Pfam (PF17135)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL18-A,RP28
58LT60S ribosomal protein L19-Apolymer18821631.11UniProt (P0CX82)
Pfam (PF01280)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
59LU60S ribosomal protein L20-Apolymer17120347.71UniProt (P0CX23)
Pfam (PF01775)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L18a,Large ribosomal subunit protein eL20-A
60LV60S ribosomal protein L21-Apolymer15918148.11UniProt (Q02753)
Pfam (PF01157)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL21-A
61LW60S ribosomal protein L22-Apolymer10011263.91UniProt (P05749)
Pfam (PF01776)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
62LX60S ribosomal protein L23-Apolymer13614362.81UniProt (P0CX41)
Pfam (PF00238)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
63LY60S ribosomal protein L24-Apolymer617214.51UniProt (P04449)
Pfam (PF01246)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L30,Large ribosomal subunit protein eL24-A,RP29,YL21
64LZ60S ribosomal protein L25polymer12113771.21UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
65La60S ribosomal protein L26-Apolymer12514005.51UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L33,Large ribosomal subunit protein uL24-A,YL33
66Lb60S ribosomal protein L27-Apolymer13515437.21UniProt (P0C2H6)
Pfam (PF01777)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL27-A
67Lc60S ribosomal protein L28polymer14816630.51UniProt (P02406)
Pfam (PF00828)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
68Ld60S ribosomal protein L29polymer586560.71UniProt (P05747)
Pfam (PF01779)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL29,YL43
69Le60S ribosomal protein L30polymer9610487.31UniProt (P14120)
Pfam (PF01248)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
70Lf60S ribosomal protein L31-Apolymer10912649.81UniProt (P0C2H8)
Pfam (PF01198)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
71Lg60S ribosomal protein L32polymer12714478.11UniProt (P38061)
Pfam (PF01655)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL32
72Lh60S ribosomal protein L33-Apolymer10612045.91UniProt (P05744)
Pfam (PF01247)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
73Li60S ribosomal protein L34-Apolymer11212608.81UniProt (P87262)
Pfam (PF01199)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL34-A
74Lj60S ribosomal protein L35-Apolymer11913811.41UniProt (P0CX84)
Pfam (PF00831)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein uL29-A
75Lk60S ribosomal protein L36-Apolymer9911020.11UniProt (P05745)
Pfam (PF01158)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
76Ll60S ribosomal protein L37-Apolymer819229.61UniProt (P49166)
Pfam (PF01907)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L43,Large ribosomal subunit protein eL37-A,YL35,YP55
77Lm60S ribosomal protein L38polymer778714.41UniProt (P49167)
Pfam (PF01781)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL38
78Ln60S ribosomal protein L39polymer506227.41UniProt (P04650)
Pfam (PF00832)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L46,Large ribosomal subunit protein eL39,YL40
79LoUbiquitin-60S ribosomal protein L40polymer526032.31UniProt (P0CH08)
Pfam (PF01020)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)
80Lp60S ribosomal protein L41-Bpolymer253354.21UniProt (P0CX87)
Pfam (PF05162)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L47,Large ribosomal subunit protein eL41-B,YL41
81Lq60S ribosomal protein L42-Apolymer10311840.21UniProt (P0CX27)
Pfam (PF00935)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L41,Large ribosomal subunit protein eL42-A,YL27,YP44
82Lr60S ribosomal protein L43-Apolymer919981.81UniProt (P0CX25)
Pfam (PF01780)
In PDB
Saccharomyces cerevisiae S288c (Baker's yeast)L37a,Large ribosomal subunit protein eL43-A,YL35
Sequence modifications
SN: 80 - 152 (UniProt: P05759)
PDBExternal DatabaseDetails
Ala 97Lys 97conflict
SO: 7 - 319 (UniProt: P38011)
PDBExternal DatabaseDetails
Ala 161Lys 161conflict
SV: 2 - 200 (UniProt: P0CX39)
PDBExternal DatabaseDetails
-Lys 124deletion
-Lys 125deletion
-Asn 126deletion
-Val 127deletion
-Lys 128deletion
-Glu 129deletion
-Glu 130deletion
-Glu 131deletion
-Thr 132deletion
-Val 133deletion
-Ala 134deletion
Sn: 1 - 76 (GenBank: 176433)
PDBExternal DatabaseDetails
A 10G 10conflict
LH: 2 - 176 (UniProt: P05739)
PDBExternal DatabaseDetails
-Asn 120deletion
-Leu 121deletion
-Phe 122deletion
-Pro 123deletion
-Glu 124deletion
-Gln 125deletion
-Gln 126deletion
-Thr 127deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains82
Total formula weight3082669.7
All*Total formula weight3082669.7
*Water molecules are not included.

222624

PDB entries from 2024-07-17

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