7N4K
6218 TCR in complex with H2-Db PA 224
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | H-2 class I histocompatibility antigen, D-B alpha chain | polymer | 277 | 32184.8 | 1 | UniProt (P01899) Pfam (PF00129) Pfam (PF07654) | Mus musculus (Mouse) | H-2D(B) |
| 2 | B (B) | Beta-2-microglobulin | polymer | 100 | 11879.4 | 1 | UniProt (P61769) Pfam (PF07654) | Homo sapiens (Human) | |
| 3 | C (C) | Peptide from Polymerase acidic protein | polymer | 10 | 1186.3 | 1 | UniProt (O89752) | Influenza A virus | RNA-directed RNA polymerase subunit P2 |
| 4 | D (D) | Fusion protein of T cell receptor alpha variable 21-DV12 and T-cell receptor, sp3.4 alpha chain | polymer | 199 | 22005.4 | 1 | UniProt (A0A075B6C4) UniProt (K7N5N2) Pfam (PF07686) Pfam (PF09291) | Mus musculus (Mouse) | T-cell receptor,sp3.4 beta chain |
| 5 | E (E) | Fusion protein of T cell receptor beta, variable 29 and Human nkt tcr beta chain | polymer | 240 | 27575.9 | 1 | UniProt (A0A0G2LB96) UniProt (K7N5M4) Pfam (PF07686) Pfam (PF07654) | Mus musculus (Mouse) | |
| 6 | F, G, H, I (D, E) | SODIUM ION | non-polymer | 23.0 | 4 | Chemie (NA) | |||
| 7 | J, K, L, M, N (A, B, C, D, E) | water | water | 18.0 | 398 | Chemie (HOH) |
Sequence modifications
B: 1 - 99 (UniProt: P61769)
D: 3 - 106 (UniProt: A0A075B6C4)
D: 128 - 217 (UniProt: K7N5N2)
E: 1 - 107 (UniProt: A0A0G2LB96)
E: 111 - 253 (UniProt: K7N5M4)
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
| PDB | External Database | Details |
|---|---|---|
| Ser 107 | - | linker |
| Gly 108 | - | linker |
| Gly 109 | - | linker |
| Ser 110 | - | linker |
| Asn 111 | - | linker |
| Tyr 112 | - | linker |
| Lys 113 | - | linker |
| Leu 114 | - | linker |
| Thr 115 | - | linker |
| Phe 116 | - | linker |
| Gly 117 | - | linker |
| Lys 118 | - | linker |
| Gly 119 | - | linker |
| Thr 120 | - | linker |
| Leu 121 | - | linker |
| Leu 122 | - | linker |
| Thr 123 | - | linker |
| Val 124 | - | linker |
| Thr 125 | - | linker |
| Pro 126 | - | linker |
| Asn 127 | - | linker |
E: 1 - 107 (UniProt: A0A0G2LB96)
| PDB | External Database | Details |
|---|---|---|
| Phe 108 | - | linker |
| Gly 109 | - | linker |
| Arg 110 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Leu 123 | Thr 119 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 94831.8 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 92.0 | |
| All* | Total formula weight | 94923.7 |
