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7MPJ

Stm1 bound vacant 80S structure isolated from wild-type

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(BA)
40S ribosomal protein S0-Apolymer20622811.11UniProt (P32905)
Pfam (PF00318)
Saccharomyces cerevisiae (Baker's yeast)Nucleic acid-binding protein NAB1A,Small ribosomal subunit protein uS2-A
2B
(BB)
40S ribosomal protein S1-Apolymer21424312.21UniProt (P33442)
Pfam (PF01015)
Saccharomyces cerevisiae (Baker's yeast)RP10A,Small ribosomal subunit protein eS1-A
3C
(BC)
40S ribosomal protein S2polymer21723213.01UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
Saccharomyces cerevisiae (Baker's yeast)Omnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5
4D
(BD)
40S ribosomal protein S3polymer22324702.81UniProt (P05750)
Pfam (PF07650)
Pfam (PF00189)
Saccharomyces cerevisiae (Baker's yeast)RP13,Small ribosomal subunit protein uS3,YS3
5E
(BE)
40S ribosomal protein S4-Apolymer26029338.11UniProt (P0CX35)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Saccharomyces cerevisiae (Baker's yeast)RP5,S7,Small ribosomal subunit protein eS4-A,YS6
6F
(BF)
40S ribosomal protein S5polymer20622908.31UniProt (P26783)
Pfam (PF00177)
Saccharomyces cerevisiae (Baker's yeast)RP14,S2,Small ribosomal subunit protein uS7,YS8
7G
(BG)
40S ribosomal protein S6-Apolymer22625895.11UniProt (P0CX37)
Pfam (PF01092)
Saccharomyces cerevisiae (Baker's yeast)RP9,S10,Small ribosomal subunit protein eS6-A,YS4
8H
(BH)
40S ribosomal protein S7-Apolymer18421000.51UniProt (P26786)
Pfam (PF01251)
Saccharomyces cerevisiae (Baker's yeast)RP30,RP40,Small ribosomal subunit protein eS7-A
9I
(BI)
40S ribosomal protein S8-Apolymer18821147.21UniProt (P0CX39)
Pfam (PF01201)
Saccharomyces cerevisiae (Baker's yeast)RP19,S14,Small ribosomal subunit protein eS8-A,YS9
10J
(BJ)
40S ribosomal protein S9-Apolymer18521210.71UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
Saccharomyces cerevisiae (Baker's yeast)RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11
11K
(BK)
40S ribosomal protein S10-Apolymer9611571.11UniProt (Q08745)
Pfam (PF03501)
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS10-A
12L
(BL)
40S ribosomal protein S11-Apolymer15517654.71UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
Saccharomyces cerevisiae (Baker's yeast)RP41,S18,Small ribosomal subunit protein uS17-A,YS12
13M
(BM)
40S ribosomal protein S12polymer12113028.01UniProt (P48589)
Pfam (PF01248)
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS12
14N
(BN)
40S ribosomal protein S13polymer15016928.71UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
Saccharomyces cerevisiae (Baker's yeast)S27a,Small ribosomal subunit protein uS15,YS15
15O
(BO)
40S ribosomal protein S14-Apolymer12713446.41UniProt (P06367)
Pfam (PF00411)
Saccharomyces cerevisiae (Baker's yeast)RP59A,Small ribosomal subunit protein uS11-A
16P
(BP)
40S ribosomal protein S15polymer12414155.71UniProt (Q01855)
Pfam (PF00203)
Saccharomyces cerevisiae (Baker's yeast)RIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21
17Q
(BQ)
40S ribosomal protein S16-Apolymer14115659.21UniProt (P0CX51)
Pfam (PF00380)
Saccharomyces cerevisiae (Baker's yeast)RP61R,Small ribosomal subunit protein uS9-A
18R
(BR)
40S ribosomal protein S17-Apolymer12113911.21UniProt (P02407)
Pfam (PF00833)
Saccharomyces cerevisiae (Baker's yeast)RP51A,Small ribosomal subunit protein eS17-A
19S
(BS)
40S ribosomal protein S18-Apolymer14516940.41UniProt (P0CX55)
Pfam (PF00416)
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein uS13-A
20T
(BT)
40S ribosomal protein S19-Apolymer14115566.71UniProt (P07280)
Pfam (PF01090)
Saccharomyces cerevisiae (Baker's yeast)RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A
21U
(BU)
40S ribosomal protein S20polymer10712190.21UniProt (P38701)
Pfam (PF00338)
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein uS10
22V
(BV)
40S ribosomal protein S21-Apolymer879758.81UniProt (P0C0V8)
Pfam (PF01249)
Saccharomyces cerevisiae (Baker's yeast)S26,Small ribosomal subunit protein eS21-A,YS25
23W
(BW)
40S ribosomal protein S22-Apolymer12914518.91UniProt (P0C0W1)
Pfam (PF00410)
Saccharomyces cerevisiae (Baker's yeast)RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22
24X
(BX)
40S ribosomal protein S23-Apolymer14415942.71UniProt (P0CX29)
Pfam (PF00164)
Saccharomyces cerevisiae (Baker's yeast)RP37,S28,Small ribosomal subunit protein uS12-A,YS14
25Y
(BY)
40S ribosomal protein S24-Apolymer13415231.61UniProt (P0CX31)
Pfam (PF01282)
Saccharomyces cerevisiae (Baker's yeast)RP50,Small ribosomal subunit protein eS24-A
26Z
(BZ)
40S ribosomal protein S25-Apolymer697930.31UniProt (Q3E792)
Pfam (PF03297)
Saccharomyces cerevisiae (Baker's yeast)RP45,S31,Small ribosomal subunit protein eS25-A,YS23
27AA
(Ba)
40S ribosomal protein S26-Apolymer9711023.01UniProt (P39938)
Pfam (PF01283)
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS26-A
28BA
(Bb)
40S ribosomal protein S27-Apolymer818762.21UniProt (P35997)
Pfam (PF01667)
Saccharomyces cerevisiae (Baker's yeast)RP61,Small ribosomal subunit protein eS27-A,YS20
29CA
(Bc)
40S ribosomal protein S28-Apolymer637116.31UniProt (Q3E7X9)
Pfam (PF01200)
Saccharomyces cerevisiae (Baker's yeast)S33,Small ribosomal subunit protein eS28-A,YS27
30DA
(Bd)
40S ribosomal protein S29-Apolymer536335.31UniProt (P41057)
Pfam (PF00253)
Saccharomyces cerevisiae (Baker's yeast)S36,Small ribosomal subunit protein uS14-A,YS29
31EA
(Be)
40S ribosomal protein S30-Apolymer606779.11UniProt (P0CX33)
Pfam (PF04758)
Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS30-A
32FA
(Bf)
40S ribosomal protein S31polymer576491.61UniProt (P05759)
Pfam (PF01599)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)CEP76,S37,Small ribosomal subunit protein eS31,YS24
33GA
(Bg)
Guanine nucleotide-binding protein subunit beta-like proteinpolymer31234151.51UniProt (P38011)
Pfam (PF00400)
Saccharomyces cerevisiae (Baker's yeast)Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1
34HA
(Bh)
Suppressor protein STM1polymer899664.41UniProt (P39015)Saccharomyces cerevisiae (Baker's yeast)3BP1,GU4 nucleic-binding protein 2,G4p2 protein,POP2 multicopy suppressor protein 4,Ribosomal subunits association factor,AF,TOM1 suppressor protein 1,Triplex-binding protein 1
35IA
(B5)
18S rRNApolymer1781574283.91Saccharomyces cerevisiae (Baker's yeast)
36JA
(A1)
25S rRNApolymer31371014553.31Saccharomyces cerevisiae (Baker's yeast)
37KA
(A3)
5S rRNApolymer12138951.11Saccharomyces cerevisiae (Baker's yeast)
38LA
(A4)
5.8S rRNApolymer15850682.91Saccharomyces cerevisiae (Baker's yeast)
39MA
(AA)
60S ribosomal protein L2-Apolymer24726643.71UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
Saccharomyces cerevisiae (Baker's yeast)L5,Large ribosomal subunit protein uL2-A,RP8,YL6
40NA
(AB)
60S ribosomal protein L3polymer38643732.61UniProt (P14126)
Pfam (PF00297)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
41OA
(AC)
60S ribosomal protein L4-Apolymer36139027.91UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
Saccharomyces cerevisiae (Baker's yeast)L2,Large ribosomal subunit protein uL4-A,RP2,YL2
42PA
(AD)
60S ribosomal protein L5polymer29233158.11UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
Saccharomyces cerevisiae (Baker's yeast)L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
43QA
(AE)
60S ribosomal protein L6-Apolymer15617579.71Saccharomyces cerevisiae (Baker's yeast)
44RA
(AF)
60S ribosomal protein L7-Apolymer22225240.41UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
Saccharomyces cerevisiae (Baker's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
45SA
(AG)
60S ribosomal protein L8-Apolymer23025541.81UniProt (P17076)
Pfam (PF01248)
Saccharomyces cerevisiae (Baker's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
46TA
(AH)
60S ribosomal protein L9-Apolymer19021491.91UniProt (P05738)
Pfam (PF00347)
Saccharomyces cerevisiae (Baker's yeast)L8,Large ribosomal subunit protein uL6-A,RP24,YL11
47UA
(AI)
60S ribosomal protein L10polymer20523733.51UniProt (P41805)
Pfam (PF00252)
Saccharomyces cerevisiae (Baker's yeast)L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
48VA
(AJ)
60S ribosomal protein L11-Apolymer16919266.11UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
Saccharomyces cerevisiae (Baker's yeast)L16,Large ribosomal subunit protein uL5-A,RP39,YL22
49WA
(AL)
60S ribosomal protein L13-Apolymer19321885.21UniProt (Q12690)
Pfam (PF01294)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL13-A
50XA
(AM)
60S ribosomal protein L14-Apolymer13614976.81UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL14-A
51YA
(AN)
60S ribosomal protein L15-Apolymer20324351.21UniProt (P05748)
Pfam (PF00827)
Saccharomyces cerevisiae (Baker's yeast)L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
52ZA
(AO)
60S ribosomal protein L16-Apolymer19722029.01UniProt (P26784)
Pfam (PF00572)
Saccharomyces cerevisiae (Baker's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
53AB
(AP)
60S ribosomal protein L17-Apolymer17519687.41UniProt (P05740)
Pfam (PF00237)
Saccharomyces cerevisiae (Baker's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
54BB
(AQ)
60S ribosomal protein L18-Apolymer18520478.11UniProt (P0CX49)
Pfam (PF17135)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL18-A,RP28
55CB
(AR)
60S ribosomal protein L19-Apolymer18821631.11UniProt (P0CX82)
Pfam (PF01280)
Saccharomyces cerevisiae (Baker's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
56DB
(AS)
60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
Saccharomyces cerevisiae (Baker's yeast)L18a,Large ribosomal subunit protein eL20-A
57EB
(AT)
60S ribosomal protein L21-Apolymer15918148.11UniProt (Q02753)
Pfam (PF01157)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL21-A
58FB
(AU)
60S ribosomal protein L22-Apolymer10011263.91UniProt (P05749)
Pfam (PF01776)
Saccharomyces cerevisiae (Baker's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
59GB
(AV)
60S ribosomal protein L23-Apolymer13614362.81UniProt (P0CX41)
Pfam (PF00238)
Saccharomyces cerevisiae (Baker's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
60HB
(AW)
60S ribosomal protein L24-Apolymer637384.71UniProt (P04449)
Pfam (PF01246)
Saccharomyces cerevisiae (Baker's yeast)L30,Large ribosomal subunit protein eL24-A,RP29,YL21
61IB
(AX)
60S ribosomal protein L25polymer12113771.21UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
62JB
(AY)
60S ribosomal protein L26-Apolymer12614134.61UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
Saccharomyces cerevisiae (Baker's yeast)L33,Large ribosomal subunit protein uL24-A,YL33
63KB
(AZ)
60S ribosomal protein L27-Apolymer13515437.21UniProt (P0C2H6)
Pfam (PF01777)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL27-A
64LB
(Aa)
60S ribosomal protein L28polymer14816630.51UniProt (P02406)
Pfam (PF00828)
Saccharomyces cerevisiae (Baker's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
65MB
(Ab)
60S ribosomal protein L29polymer586560.71UniProt (P05747)
Pfam (PF01779)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL29,YL43
66NB
(Ac)
60S ribosomal protein L30polymer9710558.31UniProt (P14120)
Pfam (PF01248)
Saccharomyces cerevisiae (Baker's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
67OB
(Ad)
60S ribosomal protein L31-Apolymer10912649.81UniProt (P0C2H8)
Pfam (PF01198)
Saccharomyces cerevisiae (Baker's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
68PB
(Ae)
60S ribosomal protein L32polymer12714478.11UniProt (P38061)
Pfam (PF01655)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL32
69QB
(Af)
60S ribosomal protein L33-Apolymer10612045.91UniProt (P05744)
Pfam (PF01247)
Saccharomyces cerevisiae (Baker's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
70RB
(Ag)
60S ribosomal protein L34-Apolymer11212608.81UniProt (P87262)
Pfam (PF01199)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL34-A
71SB
(Ah)
60S ribosomal protein L35-Apolymer11913811.41UniProt (P0CX84)
Pfam (PF00831)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL29-A
72TB
(Ai)
60S ribosomal protein L36-Apolymer9911020.11UniProt (P05745)
Pfam (PF01158)
Saccharomyces cerevisiae (Baker's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
73UB
(Aj)
60S ribosomal protein L37-Apolymer879746.21UniProt (P49166)
Pfam (PF01907)
Saccharomyces cerevisiae (Baker's yeast)L43,Large ribosomal subunit protein eL37-A,YL35,YP55
74VB
(Ak)
60S ribosomal protein L38polymer778714.41UniProt (P49167)
Pfam (PF01781)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL38
75WB
(Al)
60S ribosomal protein L39polymer506227.41UniProt (P04650)
Pfam (PF00832)
Saccharomyces cerevisiae (Baker's yeast)L46,Large ribosomal subunit protein eL39,YL40
76XB
(Am)
60S ribosomal protein L40-Apolymer526032.31UniProt (P0CH08)
Pfam (PF01020)
Saccharomyces cerevisiae (Baker's yeast)CEP52,Large ribosomal subunit protein eL40-A
77YB
(An)
60S ribosomal protein L41-Apolymer253354.21UniProt (P0CX86)
Pfam (PF05162)
Saccharomyces cerevisiae (Baker's yeast)L47,Large ribosomal subunit protein eL41-A,YL41
78ZB
(Ao)
60S ribosomal protein L42-Apolymer10512115.51UniProt (P0CX27)
Pfam (PF00935)
Saccharomyces cerevisiae (Baker's yeast)L41,Large ribosomal subunit protein eL42-A,YL27,YP44
79AC
(Ap)
60S ribosomal protein L43-Apolymer919981.81UniProt (P0CX25)
Pfam (PF01780)
Saccharomyces cerevisiae (Baker's yeast)L37a,Large ribosomal subunit protein eL43-A,YL35
80AAA, ABA, ACA, AD, ADA...
(A1, A4, B5, AF, Aa...)
MAGNESIUM IONnon-polymer24.3745Chemie (MG)
81DC, TEA
(Bb, Ao)
ZINC IONnon-polymer65.42Chemie (ZN)
Sequence modifications
BI: 2 - 200 (UniProt: P0CX39)
PDBExternal DatabaseDetails
-Lys 124deletion
-Lys 125deletion
-Asn 126deletion
-Val 127deletion
-Lys 128deletion
-Glu 129deletion
-Glu 130deletion
-Glu 131deletion
-Thr 132deletion
-Val 133deletion
-Ala 134deletion
BR: 2 - 126 (UniProt: P02407)
PDBExternal DatabaseDetails
-Ser 96deletion
-Asn 97deletion
-Gly 98deletion
-Val 99deletion
Bf: 93 - 152 (UniProt: P05759)
PDBExternal DatabaseDetails
Ala 97Lys 97conflict
-Cys 126deletion
-Gly 127deletion
-Ala 128deletion
AI: 2 - 218 (UniProt: P41805)
PDBExternal DatabaseDetails
-Met 102deletion
-Leu 103deletion
-Ser 104deletion
-Cys 105deletion
-Ala 106deletion
-Gly 107deletion
-Ala 108deletion
-Asp 109deletion
-Arg 110deletion
-Leu 111deletion
-Gln 112deletion
-Gln 113deletion
AP: 2 - 184 (UniProt: P05740)
PDBExternal DatabaseDetails
-Ala 156deletion
-Val 157deletion
-Ala 158deletion
-Lys 159deletion
-Ala 160deletion
-Ala 161deletion
-Glu 162deletion
-Lys 163deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains79
Total formula weight2931739.2
Non-Polymers*Number of molecules747
Total formula weight18238.0
All*Total formula weight2949977.2
*Water molecules are not included.

226707

PDB entries from 2024-10-30

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