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7MDZ

80S rabbit ribosome stalled with benzamide-CHX

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ARibosomal protein L8polymer25728088.91UniProt (G1TT27)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Oryctolagus cuniculus (Rabbit)
2BuL3polymer40346108.01UniProt (G1TL06)
Pfam (PF00297)
In PDB
Oryctolagus cuniculus (Rabbit)
3C60S ribosomal protein L4polymer42547727.61UniProt (G1SVW5)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Oryctolagus cuniculus (Rabbit)
4DRibosomal_L18_c domain-containing proteinpolymer29734481.81UniProt (G1SYJ6)
UniProt (by SIFTS) (P19949)
In PDB
Oryctolagus cuniculus (Rabbit)
5E60S ribosomal protein L6polymer29133028.31UniProt (G1SKF7)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Oryctolagus cuniculus (Rabbit)
6F60S ribosomal protein L7polymer24729201.81UniProt (G1TUB1)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Oryctolagus cuniculus (Rabbit)
7G60S ribosomal protein L7apolymer31936221.51UniProt (G1STW0)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (Rabbit)
8H60S ribosomal protein L9polymer19221871.41UniProt (G1SWI6)
Pfam (PF00347)
In PDB
Oryctolagus cuniculus (Rabbit)
9I60S ribosomal protein L10polymer21424643.11UniProt (B7NZQ2)
Pfam (PF00252)
In PDB
Oryctolagus cuniculus (Rabbit)
10J60S ribosomal protein L11polymer17820288.51UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Oryctolagus cuniculus (Rabbit)
11L60S ribosomal protein L13polymer21124331.71UniProt (G1TPV0)
In PDB
Oryctolagus cuniculus (Rabbit)
12M60S ribosomal protein L14polymer21823870.51UniProt (G1SZ12)
Pfam (PF01929)
In PDB
Oryctolagus cuniculus (Rabbit)
13NRibosomal protein L15polymer20424207.31UniProt (G1T0C1)
Pfam (PF00827)
In PDB
Oryctolagus cuniculus (Rabbit)
14OuL13polymer20323533.31Oryctolagus cuniculus
15PuL22polymer18421444.21UniProt (G1TVT6)
Pfam (PF00237)
UniProt (by SIFTS) (G1SCJ6)
In PDB
Oryctolagus cuniculus (Rabbit)
16QRibosomal protein L18polymer18821699.71UniProt (G1TFE0)
Pfam (PF17135)
In PDB
Oryctolagus cuniculus (Rabbit)
17RRibosomal protein L19polymer19623535.31UniProt (G1TJR3)
Pfam (PF01280)
In PDB
Oryctolagus cuniculus (Rabbit)
18S60S ribosomal protein L18apolymer17620827.61UniProt (G1TTY7)
Pfam (PF01775)
In PDB
Oryctolagus cuniculus (Rabbit)
19TeL21polymer16018610.01UniProt (G1SHQ2)
Pfam (PF01157)
In PDB
Oryctolagus cuniculus (Rabbit)
20UeL22polymer12814813.01UniProt (G1TSG1)
Pfam (PF01776)
In PDB
Oryctolagus cuniculus (Rabbit)
21VRibosomal protein L23polymer14014892.51UniProt (G1T6D1)
Pfam (PF00238)
In PDB
Oryctolagus cuniculus (Rabbit)
22W60S ribosomal protein L24polymer15717825.11UniProt (G1SE28)
Pfam (PF01246)
In PDB
Oryctolagus cuniculus (Rabbit)
23XeL23polymer15617768.21UniProt (G1SE76)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Oryctolagus cuniculus (Rabbit)
24YuL24polymer14517303.41UniProt (G1SQH0)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Oryctolagus cuniculus (Rabbit)
25Z60S ribosomal protein L27polymer13615835.81UniProt (G1TXF6)
Pfam (PF00467)
Pfam (PF01777)
In PDB
Oryctolagus cuniculus (Rabbit)
26a60S ribosomal protein L27apolymer14816620.61UniProt (G1SNY0)
Pfam (PF00828)
In PDB
Oryctolagus cuniculus (Rabbit)
27b60S ribosomal protein L29polymer24526708.71UniProt (G1SGR6)
Pfam (PF01779)
In PDB
Oryctolagus cuniculus (Rabbit)
28ceL30polymer11512807.11UniProt (G1TDL2)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (Rabbit)
29deL31polymer12514494.91UniProt (G1SHG0)
Pfam (PF01198)
In PDB
Oryctolagus cuniculus (Rabbit)
30eeL32polymer13515898.91UniProt (G1U437)
Pfam (PF01655)
UniProt (by SIFTS) (G1TUN8)
In PDB
Oryctolagus cuniculus (Rabbit)
31feL33polymer11012580.81UniProt (G1SF08)
Pfam (PF01247)
In PDB
Oryctolagus cuniculus (Rabbit)
32g60S ribosomal protein L34polymer11613196.91UniProt (G1U945)
Pfam (PF01199)
UniProt (by SIFTS) (G1TXG5)
In PDB
Oryctolagus cuniculus (Rabbit)
33heL35polymer12314566.61UniProt (G1SIT5)
Pfam (PF00831)
In PDB
Oryctolagus cuniculus (Rabbit)
34i60S ribosomal protein L36polymer10512263.81UniProt (G1TTQ5)
Pfam (PF01158)
In PDB
Oryctolagus cuniculus (Rabbit)
35jRibosomal protein L37polymer9711111.01UniProt (U3KPD5)
Pfam (PF01907)
In PDB
Oryctolagus cuniculus (Rabbit)
36k60S ribosomal protein L38polymer708238.91UniProt (G1U001)
Pfam (PF01781)
In PDB
Oryctolagus cuniculus (Rabbit)
37leL39polymer516455.81UniProt (G1TTN1)
Pfam (PF00832)
In PDB
Oryctolagus cuniculus (Rabbit)
38meL40polymer10211699.81Oryctolagus cuniculus
39n60s ribosomal protein l41polymer253473.51UniProt (A0A087WNH4)
Pfam (PF05162)
In PDB
Oryctolagus cuniculus (Rabbit)
40oeL42polymer10612477.01UniProt (G1U344)
Pfam (PF00935)
UniProt (by SIFTS) (G1T040)
In PDB
Oryctolagus cuniculus (Rabbit)
41peL43polymer9210299.41UniProt (G1SY53)
Pfam (PF01780)
In PDB
Oryctolagus cuniculus (Rabbit)
42reL28polymer13715783.61UniProt (G1U7L1)
Pfam (PF01778)
In PDB
Oryctolagus cuniculus (Rabbit)
43AA40S ribosomal protein SApolymer29532958.01UniProt (G1TLT8)
Pfam (PF00318)
Pfam (PF16122)
In PDB
Oryctolagus cuniculus (Rabbit)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40
44BBeS1polymer26430002.11UniProt (G1SS70)
Pfam (PF01015)
In PDB
Oryctolagus cuniculus (Rabbit)40S ribosomal protein S3a
45CCuS5polymer29331327.41Oryctolagus cuniculus
46DDRibosomal protein S3polymer24326715.31UniProt (G1TNM3)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Oryctolagus cuniculus (Rabbit)
47EE40S ribosomal protein S4polymer26329654.91UniProt (G1TK17)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB
Oryctolagus cuniculus (Rabbit)
48FFuS7polymer20422913.51UniProt (G1TFM5)
Pfam (PF00177)
In PDB
Oryctolagus cuniculus (Rabbit)40S ribosomal protein S5
49GGeS6polymer24928751.91UniProt (G1TM55)
Pfam (PF01092)
In PDB
Oryctolagus cuniculus (Rabbit)40S ribosomal protein S6
50HHeS7polymer19422168.91UniProt (G1SVB0)
In PDB
Oryctolagus cuniculus (Rabbit)40S ribosomal protein S7
51IIeS8polymer20824263.41UniProt (G1TJW1)
Pfam (PF01201)
In PDB
Oryctolagus cuniculus (Rabbit)40S ribosomal protein S8
52JJuS4polymer19422641.61UniProt (B7NZS8)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Oryctolagus cuniculus (Rabbit)Ribosomal protein S9
53KKS10_plectin domain-containing proteinpolymer16518933.81UniProt (G1TPV3)
Pfam (PF03501)
In PDB
Oryctolagus cuniculus (Rabbit)
54LLuS17polymer15818468.81UniProt (G1TRM4)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Oryctolagus cuniculus (Rabbit)40S ribosomal protein S11
55MMeS12polymer13214539.01UniProt (G1SFR8)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (Rabbit)40S ribosomal protein S12
56NNuS15polymer15117259.41UniProt (G1SP51)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Oryctolagus cuniculus (Rabbit)Ribosomal protein S13
57OOuS11polymer16818134.01UniProt (G1U472)
Pfam (PF00411)
UniProt (by SIFTS) (G1T1F0)
In PDB
Oryctolagus cuniculus (Rabbit)
58PPuS19polymer14517049.21UniProt (G1U0Q2)
Pfam (PF00203)
In PDB
Oryctolagus cuniculus (Rabbit)
59QQuS9polymer14616477.41UniProt (G1SGX4)
Pfam (PF00380)
In PDB
Oryctolagus cuniculus (Rabbit)
60RReS17polymer13515552.11UniProt (G1TU13)
Pfam (PF00833)
In PDB
Oryctolagus cuniculus (Rabbit)
61SSuS13polymer15217759.81UniProt (G1TPG3)
Pfam (PF00416)
In PDB
Oryctolagus cuniculus (Rabbit)
62TTeS19polymer14516106.61UniProt (G1TN62)
Pfam (PF01090)
In PDB
Oryctolagus cuniculus (Rabbit)
63UUuS10polymer11913398.81UniProt (G1SIZ2)
Pfam (PF00338)
In PDB
Oryctolagus cuniculus (Rabbit)
64VV40S ribosomal protein S21polymer839124.41UniProt (G1TM82)
Pfam (PF01249)
In PDB
Oryctolagus cuniculus (Rabbit)
65WWuS8polymer13014865.61UniProt (G1TG89)
Pfam (PF00410)
In PDB
Oryctolagus cuniculus (Rabbit)Ribosomal protein S15a
66XXuS12polymer14315844.71UniProt (G1SZ47)
Pfam (PF00164)
In PDB
Oryctolagus cuniculus (Rabbit)
67YY40S ribosomal protein S24polymer13015107.91UniProt (G1T3D8)
Pfam (PF01282)
In PDB
Oryctolagus cuniculus (Rabbit)
68ZZeS25polymer12513776.21UniProt (G1TDB3)
Pfam (PF03297)
In PDB
Oryctolagus cuniculus (Rabbit)
69aa40S ribosomal protein S26polymer11513047.51UniProt (G1TFE8)
Pfam (PF01283)
In PDB
Oryctolagus cuniculus (Rabbit)
70bbeS27polymer849480.21UniProt (G1TZ76)
Pfam (PF01667)
In PDB
Oryctolagus cuniculus (Rabbit)40S ribosomal protein S27
71cceS28polymer697855.11UniProt (G1TIB4)
Pfam (PF01200)
In PDB
Oryctolagus cuniculus (Rabbit)Ribosomal protein S28
72ddeS29polymer566690.81UniProt (G1U7M4)
Pfam (PF00253)
In PDB
Oryctolagus cuniculus (Rabbit)
73eeeS30polymer13314498.91UniProt (G1T8A2)
Pfam (PF00240)
Pfam (PF04758)
In PDB
Oryctolagus cuniculus (Rabbit)40S ribosomal protein S30
74ffeS31polymer15618004.01UniProt (G1SK22)
Pfam (PF00240)
Pfam (PF01599)
In PDB
Oryctolagus cuniculus (Rabbit)Ribosomal protein S27a
75ggRACK1polymer31735115.71UniProt (G1SJB4)
Pfam (PF00400)
In PDB
Oryctolagus cuniculus (Rabbit)
76528S rRNApolymer36031167622.61Oryctolagus cuniculus
7775S rRNApolymer12038691.91GenBank (X06789.1)Oryctolagus cuniculus
7885.8S rRNApolymer15650143.61Oryctolagus cuniculus
792P-site tRNApolymer7624485.51Oryctolagus cuniculus
80918S rRNApolymer1869602777.91Oryctolagus cuniculus
816mRNApolymer103139.91synthetic construct
825, 7, 9, A, B...MAGNESIUM IONnon-polymer24.3277Chemie (MG)
83g, j, m, o, p...ZINC IONnon-polymer65.48Chemie (ZN)
845N-[(1R,3S,4R,5S)-3-{(1R)-2-[(2R,4r,6S)-2,6-dihydroxypiperidin-4-yl]-1-hydroxyethyl}-4-hydroxy-1,5-dimethylcyclohexyl]benzamidenon-polymer400.51Chemie (Z2V)
Sequence modifications
B: 2 - 403 (UniProt: G1TL06)
PDBExternal DatabaseDetails
Met 1-initiating methionine
C: 1 - 425 (UniProt: G1SVW5)
PDBExternal DatabaseDetails
Lys 378-insertion
Val 379-insertion
Lys 380-insertion
Lys 381-insertion
Pro 382-insertion
Arg 383-insertion
Ala 384-insertion
Val 385-insertion
Gly 386-insertion
Ile 387-insertion
Lys 388-insertion
Gln 389-insertion
F: 1 - 247 (UniProt: G1TUB1)
PDBExternal DatabaseDetails
Arg 61Gly 61conflict
Arg 93Gly 93conflict
Met 131Val 131conflict
Ile 153Val 153conflict
G: 1 - 319 (UniProt: G1STW0)
PDBExternal DatabaseDetails
Gly 244Cys 244conflict
L: 1 - 211 (UniProt: G1TPV0)
PDBExternal DatabaseDetails
Ile 46-insertion
Ala 47-insertion
Pro 48-insertion
Arg 49-insertion
Pro 50-insertion
Ala 51-insertion
Ala 52-insertion
Gly 53-insertion
Pro 54-insertion
Q: 1 - 188 (UniProt: G1TFE0)
PDBExternal DatabaseDetails
Asp 4Asn 4conflict
Arg 14Trp 14conflict
Met 53Leu 53conflict
Arg 58Trp 58conflict
Arg 75Gln 75conflict
Ala 80Pro 80conflict
Val 86Ile 86conflict
Arg 104His 104conflict
Arg 110Cys 110conflict
Val 137Gly 137conflict
Gly 157Arg 157conflict
Arg 181Trp 181conflict
R: 1 - 196 (UniProt: G1TJR3)
PDBExternal DatabaseDetails
Arg 38Cys 38conflict
Arg 64Gln 64conflict
Thr 94Lys 94conflict
S: 1 - 175 (UniProt: G1TTY7)
PDBExternal DatabaseDetails
Met 1Thr 1conflict
Pro 18-insertion
Thr 19-insertion
Pro 20Ser 18conflict
Cys 22Ser 20conflict
Arg 23Pro 21conflict
Thr 24Ala 22conflict
Ser 49Leu 47conflict
Gln 50Glu 48conflict
Arg 95His 93conflict
Thr 101Ile 99conflict
Thr 102Met 100conflict
Gly 104Ser 102conflict
Ile 126Val 124conflict
Ile 132Met 130conflict
Ser 135Ala 133conflict
Lys 136Arg 134conflict
Arg 138Pro 136conflict
Lys 149Arg 147conflict
Lys 151Arg 149conflict
Thr 168Tyr 166conflict
Thr 169Ala 167conflict
Phe 176-insertion
U: 1 - 128 (UniProt: G1TSG1)
PDBExternal DatabaseDetails
Leu 18Val 18conflict
Gly 32Arg 32conflict
Ala 36Glu 36conflict
Phe 39Ser 39conflict
Gly 54Arg 54conflict
Val 60Ala 60conflict
Ser 62Thr 62conflict
Leu 63Ile 63conflict
Arg 97His 97conflict
Thr 106Ser 106conflict
Glu 126Asp 126conflict
k: 1 - 70 (UniProt: G1U001)
PDBExternal DatabaseDetails
Lys 24Asn 24conflict
AA: 1 - 295 (UniProt: G1TLT8)
PDBExternal DatabaseDetails
Thr 114Ala 114conflict
EE: 1 - 263 (UniProt: G1TK17)
PDBExternal DatabaseDetails
Gly 25Ser 25conflict
Arg 51Lys 51conflict
Thr 78Ala 78conflict
Val 156Met 156conflict
II: 1 - 208 (UniProt: G1TJW1)
PDBExternal DatabaseDetails
Arg 47Gly 47conflict
TT: 1 - 145 (UniProt: G1TN62)
PDBExternal DatabaseDetails
Gly 119Trp 119conflict
VV: 1 - 83 (UniProt: G1TM82)
PDBExternal DatabaseDetails
Asn 3Ser 3conflict
Asp 4Asn 4conflict
Gln 33Pro 33conflict
Phe 50Ser 50conflict
Ala 75Ser 75conflict
Asp 76His 76conflict
Lys 81Gln 81conflict
aa: 1 - 115 (UniProt: G1TFE8)
PDBExternal DatabaseDetails
Arg 28Cys 28conflict
Ala 56Val 56conflict
Arg 109Pro 109conflict
7: 1 - 120 (GenBank: X06789.1)
PDBExternal DatabaseDetails
U 2N 2conflict
C 36N 36conflict
U 102N 102conflict
U 112N 112conflict
U 114N 114conflict
U 119C 119conflict
U 120N 120conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains81
Total formula weight3356184.0
Non-Polymers*Number of molecules286
Total formula weight7656.2
All*Total formula weight3363840.2
*Water molecules are not included.

223790

PDB entries from 2024-08-14

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