7MDI
Structure of the Neisseria gonorrhoeae ribonucleotide reductase in the inactive state
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E, G (A, B, D, C) | Ribonucleoside-diphosphate reductase subunit alpha | polymer | 773 | 87081.3 | 4 | UniProt (Q5F8Z6) Pfam (PF03477) Pfam (PF00317) Pfam (PF02867) | Neisseria gonorrhoeae | |
| 2 | B, D, F, H (E, G, F, H) | Ribonucleoside-diphosphate reductase subunit beta | polymer | 391 | 45107.8 | 4 | UniProt (Q5F8Z5) Pfam (PF00268) | Neisseria gonorrhoeae | |
| 3 | AA, I, O, U (C, A, B, D) | CYTIDINE-5'-DIPHOSPHATE | non-polymer | 403.2 | 4 | Chemie (CDP) | |||
| 4 | BA, DA, J, L, P... (C, A, B, D) | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE | non-polymer | 491.2 | 8 | Chemie (DTP) | |||
| 5 | CA, EA, K, M, Q... (C, A, B, D) | MAGNESIUM ION | non-polymer | 24.3 | 8 | Chemie (MG) | |||
| 6 | FA, N, T, Z (H, E, G, F) | MU-OXO-DIIRON | non-polymer | 127.7 | 4 | Chemie (FEO) | |||
| 7 | GA, HA, IA, JA (A, B, D, C) | water | water | 18.0 | 24 | Chemie (HOH) |
Sequence modifications
A, B, D, C: 1 - 759 (UniProt: Q5F8Z6)
E, G, F, H: 1 - 377 (UniProt: Q5F8Z5)
| PDB | External Database | Details |
|---|---|---|
| Met -13 | - | initiating methionine |
| Gly -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| His -8 | - | expression tag |
| His -7 | - | expression tag |
| His -6 | - | expression tag |
| Glu -5 | - | expression tag |
| Asn -4 | - | expression tag |
| Leu -3 | - | expression tag |
| Tyr -2 | - | expression tag |
| Phe -1 | - | expression tag |
| Gln 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met -13 | - | initiating methionine |
| Gly -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| His -8 | - | expression tag |
| His -7 | - | expression tag |
| His -6 | - | expression tag |
| Glu -5 | - | expression tag |
| Asn -4 | - | expression tag |
| Leu -3 | - | expression tag |
| Tyr -2 | - | expression tag |
| Phe -1 | - | expression tag |
| Gln 0 | - | expression tag |
| Asp 234 | Leu 241 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 528756.5 | |
| Non-Polymers* | Number of molecules | 24 |
| Total formula weight | 6247.4 | |
| All* | Total formula weight | 535003.9 |
