7M72

MHC-like protein complex structure

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A	Antigen-presenting glycoprotein CD1d1	polymer	302	34662.0	1	UniProt (P11609) Pfam (PF16497) Pfam (PF07654) In PDB	Mus musculus (Mouse)
2	B	Beta-2-microglobulin	polymer	99	11660.4	1	UniProt (P01887) Pfam (PF07654) In PDB	Mus musculus (Mouse)
3	C	NKT Valpha14 (Mouse)-2C12 TCR,Human T-cell receptor sp3.4 alpha chain	polymer	207	22779.2	1	UniProt (K7N5N2) Pfam (PF07686) Pfam (PF09291) In PDB	Mus musculus (Mouse)
4	D	NKT Vbeta8.2 (Mouse)-2C12 TCR,Human nkt tcr beta chain	polymer	242	27114.0	1	UniProt (K7N5M4) Pfam (PF07686) Pfam (PF07654) In PDB	Mus musculus (Mouse)
5	E, G	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	2	In PDB GlyTouCan (G42666HT)
6	F	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		586.5	1	In PDB GlyTouCan (G15407YE)
7	A	(3R)-N-[(2S,3R)-1-(alpha-D-galactopyranosyloxy)-3-hydroxy-15-methylhexadecan-2-yl]-3-hydroxyheptadecanamide	non-polymer		718.1	1	Chemie (QOD)
8	A	HEPTANE	non-polymer		100.2	1	Chemie (HP6)
9		water	water		18.0	206	Chemie (HOH)

Sequence modifications

A: 1 - 279 (UniProt: P11609)

PDB	External Database	Details
His 201	Asp 219	conflict
Gly 280	-	expression tag
Ser 281	-	expression tag
Leu 282	-	expression tag
His 283	-	expression tag
His 284	-	expression tag
Ile 285	-	expression tag
Leu 286	-	expression tag
Asp 287	-	expression tag
Ala 288	-	expression tag
Gln 289	-	expression tag
Lys 290	-	expression tag
Met 291	-	expression tag
Val 292	-	expression tag
Trp 293	-	expression tag
Asn 294	-	expression tag
His 295	-	expression tag
Arg 296	-	expression tag
His 297	-	expression tag
His 298	-	expression tag
His 299	-	expression tag
His 300	-	expression tag
His 301	-	expression tag
His 302	-	expression tag

C: 1 - 117 (PDB: 7M72)
C: 118 - 210 (UniProt: K7N5N2)
D: 0 - 112 (PDB: 7M72)
D: 113 - 242 (UniProt: K7N5M4)

Contents of the asymmetric unit

Polymers	Number of chains	4
	Total formula weight	96215.5
Branched	Number of molecules	3
	Total formula weight	1435.3
Non-Polymers*	Number of molecules	2
	Total formula weight	818.3
All*	Total formula weight	98469.1

*Water molecules are not included.