7M72
MHC-like protein complex structure
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Antigen-presenting glycoprotein CD1d1 | polymer | 302 | 34662.0 | 1 | UniProt (P11609) Pfam (PF16497) Pfam (PF07654) | Mus musculus (Mouse) | |
| 2 | B (B) | Beta-2-microglobulin | polymer | 99 | 11660.4 | 1 | UniProt (P01887) Pfam (PF07654) | Mus musculus (Mouse) | |
| 3 | C (C) | NKT Valpha14 (Mouse)-2C12 TCR,Human T-cell receptor sp3.4 alpha chain | polymer | 207 | 22779.2 | 1 | UniProt (K7N5N2) Pfam (PF07686) Pfam (PF09291) | Mus musculus (Mouse) | |
| 4 | D (D) | NKT Vbeta8.2 (Mouse)-2C12 TCR,Human nkt tcr beta chain | polymer | 242 | 27114.0 | 1 | UniProt (K7N5M4) Pfam (PF07686) Pfam (PF07654) | Mus musculus (Mouse) | |
| 5 | E, G (E, G) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 6 | F (F) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 7 | H (A) | (3R)-N-[(2S,3R)-1-(alpha-D-galactopyranosyloxy)-3-hydroxy-15-methylhexadecan-2-yl]-3-hydroxyheptadecanamide | non-polymer | 718.1 | 1 | Chemie (QOD) | |||
| 8 | I (A) | HEPTANE | non-polymer | 100.2 | 1 | Chemie (HP6) | |||
| 9 | J, K, L, M (A, B, C, D) | water | water | 18.0 | 206 | Chemie (HOH) |
Sequence modifications
A: 1 - 279 (UniProt: P11609)
C: 1 - 117 (PDB: 7M72)
C: 118 - 210 (UniProt: K7N5N2)
D: 0 - 112 (PDB: 7M72)
D: 113 - 242 (UniProt: K7N5M4)
| PDB | External Database | Details |
|---|---|---|
| His 201 | Asp 219 | conflict |
| Gly 280 | - | expression tag |
| Ser 281 | - | expression tag |
| Leu 282 | - | expression tag |
| His 283 | - | expression tag |
| His 284 | - | expression tag |
| Ile 285 | - | expression tag |
| Leu 286 | - | expression tag |
| Asp 287 | - | expression tag |
| Ala 288 | - | expression tag |
| Gln 289 | - | expression tag |
| Lys 290 | - | expression tag |
| Met 291 | - | expression tag |
| Val 292 | - | expression tag |
| Trp 293 | - | expression tag |
| Asn 294 | - | expression tag |
| His 295 | - | expression tag |
| Arg 296 | - | expression tag |
| His 297 | - | expression tag |
| His 298 | - | expression tag |
| His 299 | - | expression tag |
| His 300 | - | expression tag |
| His 301 | - | expression tag |
| His 302 | - | expression tag |
C: 118 - 210 (UniProt: K7N5N2)
D: 0 - 112 (PDB: 7M72)
D: 113 - 242 (UniProt: K7N5M4)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 96215.5 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 1435.3 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 818.3 | |
| All* | Total formula weight | 98469.1 |
