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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7M5D

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1123S ribosomal RNApolymer2903941526.41Escherichia coli
2216S ribosomal RNApolymer1534497406.01GenBank (1758835854)Escherichia coli
335S ribosomal RNApolymer12038790.11GenBank (1273279017)Escherichia coli
44mRNApolymer154729.91Escherichia coli
55P-tRNApolymer7624565.81Escherichia coli
6B50S ribosomal protein L2polymer27129663.21UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
7C50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coliLarge ribosomal subunit protein uL3
8D50S ribosomal protein L4polymer20122121.61UniProt (D7Z9F6)
UniProt (by SIFTS) (P60723)
Pfam (PF00573)
In PDB		Escherichia coli
9E50S ribosomal protein L5polymer17720073.21UniProt (H4IXW7)
UniProt (by SIFTS) (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli
10F50S ribosomal protein L6polymer17518672.41UniProt (A0A5B7MHD1)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli
11G50S ribosomal protein L9polymer14915789.01UniProt (D7ZI15)
UniProt (by SIFTS) (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coli
12J50S ribosomal protein L13polymer14216050.61UniProt (D7ZET0)
UniProt (by SIFTS) (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coli
13K50S ribosomal protein L14polymer12313565.11UniProt (D7Z9G5)
UniProt (by SIFTS) (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coli
14L50S ribosomal protein L15polymer14415008.51UniProt (A0A037Y8L6)
UniProt (by SIFTS) (P02413)
Pfam (PF00828)
In PDB		Escherichia coli
15M50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coliLarge ribosomal subunit protein uL16
16N50S ribosomal protein L17polymer11913592.81UniProt (A0A2T1LEK9)
UniProt (by SIFTS) (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coli
17O50S ribosomal protein L18polymer11612663.51UniProt (F4SQ31)
UniProt (by SIFTS) (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli
18P50S ribosomal protein L19polymer11413028.11UniProt (I2XAW2)
UniProt (by SIFTS) (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coli
19Q50S ribosomal protein L20polymer11713396.81UniProt (A0A7B6WTL0)
UniProt (by SIFTS) (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coli
20R50S ribosomal protein L21polymer10311586.41UniProt (D7ZEN7)
UniProt (by SIFTS) (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coli
21S50S ribosomal protein L22polymer11012253.41UniProt (D7Z9G0)
UniProt (by SIFTS) (P61175)
Pfam (PF00237)
In PDB		Escherichia coli
22T50S ribosomal protein L23polymer9410661.61UniProt (S1EUY1)
UniProt (by SIFTS) (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coli
23U50S ribosomal protein L24polymer10311208.11UniProt (F4SQ36)
UniProt (by SIFTS) (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli
24V50S ribosomal protein L25polymer9410713.51UniProt (D7XH79)
UniProt (by SIFTS) (P68919)
Pfam (PF01386)
In PDB		Escherichia coli
25W50S ribosomal protein L27polymer768275.51UniProt (A0A073FRE3)
UniProt (by SIFTS) (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coli
26X50S ribosomal protein L28polymer778896.41UniProt (A0A5B7P765)
UniProt (by SIFTS) (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coli
27Y50S ribosomal protein L29polymer627155.31UniProt (I2X052)
UniProt (by SIFTS) (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli
28Z50S ribosomal protein L30polymer586423.61UniProt (A0A1X3K2S4)
UniProt (by SIFTS) (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coli
29a50S ribosomal protein L31polymer667516.71UniProt (A0A770S7V1)
UniProt (by SIFTS) (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coli
30b50S ribosomal protein L32polymer566332.21UniProt (H4J6G2)
UniProt (by SIFTS) (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coli
31c50S ribosomal protein L33polymer526057.21UniProt (T9DEE3)
UniProt (by SIFTS) (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coli
32d50S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
UniProt (by SIFTS) (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coli
33e50S ribosomal protein L35polymer647181.81UniProt (A0A7G1MI33)
UniProt (by SIFTS) (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coli
34f50S ribosomal protein L36polymer384377.41UniProt (A0A0E2L017)
UniProt (by SIFTS) (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coli
35g30S ribosomal protein S2polymer22525072.91UniProt (C3TPN2)
UniProt (by SIFTS) (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli
36h30S ribosomal protein S3polymer20823249.01UniProt (A0A376HTV6)
UniProt (by SIFTS) (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli
37i30S ribosomal protein S4polymer20523383.01UniProt (L3PZ69)
UniProt (by SIFTS) (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli
38j30S ribosomal protein S5polymer15616475.01UniProt (T9SGC3)
UniProt (by SIFTS) (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli
39k30S ribosomal protein S6polymer10412126.01UniProt (A0A376ZL25)
UniProt (by SIFTS) (P02358)
Pfam (PF01250)
In PDB		Escherichia coli
40l30S ribosomal protein S7polymer15116861.51UniProt (S1D5F0)
UniProt (by SIFTS) (P02359)
Pfam (PF00177)
In PDB		Escherichia coli
41m30S ribosomal protein S8polymer12914015.41UniProt (D8A1L7)
UniProt (by SIFTS) (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coli
42n30S ribosomal protein S9polymer12714554.91UniProt (T9TH92)
UniProt (by SIFTS) (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli
43o30S ribosomal protein S10polymer9911254.01UniProt (A0A073G203)
UniProt (by SIFTS) (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coli
44p30S ribosomal protein S11polymer11712487.21UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coliSmall ribosomal subunit protein uS11
45q30S ribosomal protein S12polymer12313683.11UniProt (I2UHF1)
UniProt (by SIFTS) (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli
46r30S ribosomal protein S13polymer11612868.11UniProt (I2X719)
UniProt (by SIFTS) (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coli
47s30S ribosomal protein S14polymer10011475.41UniProt (A0A1X3K3H0)
UniProt (by SIFTS) (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli
48t30S ribosomal protein S15polymer8810159.61UniProt (D7XN21)
UniProt (by SIFTS) (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coli
49u30S ribosomal protein S16polymer829207.61UniProt (B7MIU7)
UniProt (by SIFTS) (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli
50v30S ribosomal protein S17polymer809263.91UniProt (A0A080IK26)
UniProt (by SIFTS) (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli
51w30S ribosomal protein S18polymer667734.91UniProt (I2SQR9)
UniProt (by SIFTS) (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli
52x30S ribosomal protein S19polymer839421.01UniProt (A0A7G6HV07)
UniProt (by SIFTS) (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli
53y30S ribosomal protein S20polymer869577.31UniProt (I4T5W9)
UniProt (by SIFTS) (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli
54z30S ribosomal protein S21polymer708392.81UniProt (E9TH65)
UniProt (by SIFTS) (P68679)
Pfam (PF01165)
In PDB		Escherichia coli
557Peptide chain release factor 3polymer52558891.11UniProt (B7LEM0)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF16658)
UniProt (by SIFTS) (P0A7I4)
In PDB		Escherichia coliRF-3
56I50S ribosomal protein L11polymer14114763.21UniProt (I2WL52)
UniProt (by SIFTS) (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coli
57H50S ribosomal protein L10polymer13114112.31UniProt (A0A780WW86)
UniProt (by SIFTS) (P0A7J3)
Pfam (PF00466)
In PDB		Escherichia coli
58APeptide chain release factor 1polymer36040579.31UniProt (A0A073V365)
UniProt (by SIFTS) (P0A7I0)
Pfam (PF03462)
Pfam (PF00472)
In PDB		Escherichia coliRF-1
596FME-PHE-PHEpolymer3471.61Escherichia coli
60aZINC IONnon-polymer65.41Chemie (ZN)
Sequence modifications
7: 3 - 527 (UniProt: B7LEM0)
PDBExternal DatabaseDetails
Gly 151Pro 151conflict
Gly 295Lys 295conflict
Gly 296Phe 296conflict
Gly 297Thr 297conflict
Lys 477Ala 477conflict
Ala 491Ser 491conflict
Ala 492Gln 492conflict
A: 1 - 360 (UniProt: A0A073V365)
PDBExternal DatabaseDetails
Ser 3Pro 3conflict
Cys 167Ser 167conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains59
Total formula weight2272349.2
Non-Polymers*Number of molecules1
Total formula weight65.4
All*Total formula weight2272414.6
*Water molecules are not included.

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PDB entries from 2024-07-24

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