7M4Y

A. baumannii Ribosome-Eravacycline complex: E-site tRNA 70S

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	0	50S ribosomal protein L33	polymer	51	6105.3	1	UniProt (A0A062FI44) In PDB	Acinetobacter baumannii AB0057
2	1	50S ribosomal protein L34	polymer	44	5192.2	1	UniProt (A0A1J6Y3G0) Pfam (PF00468) In PDB	Acinetobacter baumannii AB0057
3	2	50S ribosomal protein L35	polymer	64	7424.1	1	UniProt (B7I693) Pfam (PF01632) In PDB	Acinetobacter baumannii AB0057
4	3	50S ribosomal protein L36	polymer	38	4276.2	1	UniProt (A0A372FJT1) In PDB	Acinetobacter baumannii AB0057
5	A	23s ribosomal RNA	polymer	2918	945315.3	1		Acinetobacter baumannii AB0057
6	B	5s ribosomal RNA	polymer	115	36997.0	1	GenBank (1577037162)	Acinetobacter baumannii AB0057
7	C	50S ribosomal protein L2	polymer	274	30346.1	1	UniProt (B7IA36) Pfam (PF00181) Pfam (PF03947) In PDB	Acinetobacter baumannii AB0057
8	D	50S ribosomal protein L3	polymer	212	22512.6	1	UniProt (B7IA39) Pfam (PF00297) In PDB	Acinetobacter baumannii AB0057
9	E	50S ribosomal protein L4	polymer	200	21583.9	1	UniProt (B7IA38) Pfam (PF00573) In PDB	Acinetobacter baumannii AB0057
10	F	50S ribosomal protein L5	polymer	178	20051.5	1	UniProt (B7IA27) Pfam (PF00281) Pfam (PF00673) In PDB	Acinetobacter baumannii AB0057
11	G	50S ribosomal protein L6	polymer	177	19126.0	1	UniProt (B7IA24) Pfam (PF00347) In PDB	Acinetobacter baumannii AB0057
12	H	50S ribosomal protein L9	polymer	148	15801.0	1	UniProt (B7IBC3) Pfam (PF01281) Pfam (PF03948) In PDB	Acinetobacter baumannii AB0057
13	I	50S ribosomal protein L13	polymer	142	15981.5	1	UniProt (B7I9B0) Pfam (PF00572) In PDB	Acinetobacter baumannii AB0057
14	J	50S ribosomal protein L14	polymer	122	13523.9	1	UniProt (N8SHC6) Pfam (PF00238) In PDB	Acinetobacter baumannii AB0057
15	K	50S ribosomal protein L15	polymer	146	15509.9	1	UniProt (B7IA20) Pfam (PF00828) In PDB	Acinetobacter baumannii AB0057
16	L	50S ribosomal protein L16	polymer	137	15498.3	1	UniProt (B7IA32) Pfam (PF00252) In PDB	Acinetobacter baumannii AB0057
17	M	50S ribosomal protein L17	polymer	125	14022.2	1	UniProt (B7IA13) Pfam (PF01196) In PDB	Acinetobacter baumannii AB0057
18	N	50S ribosomal protein L18	polymer	116	12443.3	1	UniProt (B7IA23) Pfam (PF00861) In PDB	Acinetobacter baumannii AB0057
19	O	50S ribosomal protein L19	polymer	122	13619.9	1	UniProt (B7IAS9) Pfam (PF01245) In PDB	Acinetobacter baumannii AB0057
20	P	50S ribosomal protein L20	polymer	119	13468.9	1	UniProt (V5VGC9) Pfam (PF00453) In PDB	Acinetobacter baumannii AB0057
21	Q	50S ribosomal protein L21	polymer	103	11496.4	1	UniProt (B7I6V9) Pfam (PF00829) In PDB	Acinetobacter baumannii AB0057
22	R	50S ribosomal protein L22	polymer	109	11828.9	1	UniProt (A0A009I821) Pfam (PF00237) In PDB	Acinetobacter baumannii AB0057
23	S	50S ribosomal protein L23	polymer	106	11607.4	1	UniProt (B7IA37) Pfam (PF00276) In PDB	Acinetobacter baumannii AB0057
24	T	50S ribosomal protein L24	polymer	105	11187.9	1	UniProt (B7IA28) Pfam (PF00467) Pfam (PF17136) In PDB	Acinetobacter baumannii AB0057
25	U	50S ribosomal protein L25	polymer	98	10942.6	1	UniProt (B7I7B6) Pfam (PF01386) In PDB	Acinetobacter baumannii AB0057
26	V	50S ribosomal protein L27	polymer	85	9072.4	1	UniProt (B7I6V8) Pfam (PF01016) In PDB	Acinetobacter baumannii AB0057
27	W	50S ribosomal protein L28	polymer	78	9125.8	1	UniProt (N9N7A0) Pfam (PF00830) In PDB	Acinetobacter baumannii AB0057
28	X	50S ribosomal protein L29	polymer	65	7449.7	1	UniProt (B7IA31) Pfam (PF00831) In PDB	Acinetobacter baumannii AB0057
29	Y	50S ribosomal protein L30	polymer	58	6654.8	1	UniProt (A0A062FG91) In PDB	Acinetobacter baumannii AB0057
30	Z	50S ribosomal protein L32	polymer	61	7096.9	1	UniProt (B7I7A4) Pfam (PF01783) In PDB	Acinetobacter baumannii AB0057
31	a	16s Ribosomal RNA	polymer	1544	500297.5	1	GenBank (1211343212)	Acinetobacter baumannii AB0057
32	b	30S ribosomal protein S2	polymer	250	27680.4	1	UniProt (V5VBC2) Pfam (PF00318) In PDB	Acinetobacter baumannii AB0057
33	c	30S ribosomal protein S3	polymer	250	27972.5	1	UniProt (V5V9N0) Pfam (PF07650) Pfam (PF00189) In PDB	Acinetobacter baumannii AB0057
34	d	30S ribosomal protein S4	polymer	208	23311.8	1	UniProt (B7IA15) Pfam (PF00163) Pfam (PF01479) In PDB	Acinetobacter baumannii AB0057
35	e	30S ribosomal protein S5	polymer	165	17181.8	1	UniProt (B7IA22) Pfam (PF00333) Pfam (PF03719) In PDB	Acinetobacter baumannii AB0057
36	f	30S ribosomal protein S6	polymer	127	14987.0	1	UniProt (B7IBC1) Pfam (PF01250) In PDB	Acinetobacter baumannii AB0057
37	g	30S ribosomal protein S7	polymer	156	17733.7	1	UniProt (B7I7S0) Pfam (PF00177) In PDB	Acinetobacter baumannii AB0057
38	h	30S ribosomal protein S8	polymer	131	14250.7	1	UniProt (B7IA25) Pfam (PF00410) In PDB	Acinetobacter baumannii AB0057
39	i	30S ribosomal protein S9	polymer	128	14287.6	1	UniProt (V5VBA5) Pfam (PF00380) In PDB	Acinetobacter baumannii AB0057
40	j	30S ribosomal protein S10	polymer	103	11718.5	1	UniProt (A0A009L7S8) In PDB	Acinetobacter baumannii AB0057
41	k	30S ribosomal protein S11	polymer	128	13558.5	1	UniProt (A0A4R0F9S8) Pfam (PF00411) In PDB	Acinetobacter baumannii AB0057
42	l	30S ribosomal protein S12	polymer	124	13797.1	1	UniProt (B7I7R9) Pfam (PF00164) In PDB	Acinetobacter baumannii AB0057
43	m	30S ribosomal protein S13	polymer	118	13295.6	1	UniProt (B7IA17) Pfam (PF00416) In PDB	Acinetobacter baumannii AB0057
44	n	30S ribosomal protein S14	polymer	101	11438.4	1	UniProt (B7IA26) Pfam (PF00253) In PDB	Acinetobacter baumannii AB0057
45	o	30S ribosomal protein S15	polymer	89	10145.6	1	UniProt (B7I3U0) Pfam (PF00312) In PDB	Acinetobacter baumannii AB0057
46	p	30S ribosomal protein S16	polymer	101	11223.1	1	UniProt (A0A1V3DIZ9) Pfam (PF00886) In PDB	Acinetobacter baumannii AB0057
47	q	30S ribosomal protein S17	polymer	85	9543.1	1	UniProt (B7IA30) Pfam (PF00366) In PDB	Acinetobacter baumannii AB0057
48	r	30S ribosomal protein S18	polymer	75	9009.5	1	UniProt (A0A022IPE7) In PDB	Acinetobacter baumannii AB0057
49	s	30S ribosomal protein S19	polymer	91	10207.0	1	UniProt (B7IA35) Pfam (PF00203) In PDB	Acinetobacter baumannii AB0057
50	t	30S ribosomal protein S20	polymer	88	9723.4	1	UniProt (B7I5N9) Pfam (PF01649) In PDB	Acinetobacter baumannii AB0057
51	u	30S ribosomal protein S21	polymer	71	8474.0	1	UniProt (A0A0Q7FMS9) Pfam (PF01165) In PDB	Acinetobacter baumannii AB0057
52	v	tRNA-met	polymer	77	24760.8	1	GenBank (1723902888)	Acinetobacter baumannii AB0057
53	w	mRNA	polymer	3	935.6	1		Acinetobacter baumannii AB0057
54	3	ZINC ION	non-polymer		65.4	1	Chemie (ZN)
55	A, a	Eravacycline	non-polymer		558.6	3	Chemie (YQM)
56	A, a, B, D, K...	MAGNESIUM ION	non-polymer		24.3	196	Chemie (MG)
57		water	water		18.0	1044	Chemie (HOH)

Sequence modifications

a: 1 - 1544 (GenBank: 1211343212)

PDB	External Database	Details
U 1007	C 57026	conflict
C 1034	U 57053	conflict

Contents of the asymmetric unit

Polymers	Number of chains	53
	Total formula weight	2160795.0
Non-Polymers*	Number of molecules	200
	Total formula weight	6504.9
All*	Total formula weight	2167299.9

*Water molecules are not included.