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7M0N

The crystal structure of wild type PA endonuclease (A/Vietnam/1203/2004) in complex with Raltegravir

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, C, D)
Protein PA-Xpolymer18721916.04UniProt (C6Y633)
Pfam (PF00603)
Influenza A virus (A/ruddy turnstone/New Jersey/Sg-00524/2008(H4N6))
2E, J, Q, V
(A, B, C, D)
N-(4-fluorobenzyl)-5-hydroxy-1-methyl-2-(1-methyl-1-{[(5-methyl-1,3,4-oxadiazol-2-yl)carbonyl]amino}ethyl)-6-oxo-1,6-di hydropyrimidine-4-carboxamidenon-polymer444.44Chemie (RLT)
3AA, F, G, M, N...
(D, A, B, C)
MANGANESE (II) IONnon-polymer54.98Chemie (MN)
4BA, CA, H, I, O...
(D, A, B, C)
SULFATE IONnon-polymer96.18Chemie (SO4)
5K, L, W, X, Y
(B, D)
GLYCEROLnon-polymer92.15Chemie (GOL)
6DA, EA, FA, GA
(A, B, C, D)
waterwater18.0189Chemie (HOH)
Sequence modifications
A, B, C, D: 1 - 50 (UniProt: C6Y633)
A, B, C, D: 73 - 196 (UniProt: C6Y633)
PDBExternal DatabaseDetails
Gly 50-linker
Gly 50-linker
Ser 50-linker
Thr 129Ile 129conflict
Glu 142Lys 142conflict
Ala 197-expression tag
Ala 198-expression tag
Ala 199-expression tag
Glu 200-expression tag
Leu 201-expression tag
Ala 202-expression tag
Leu 203-expression tag
Val 204-expression tag
Pro 205-expression tag
Arg 206-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight87663.8
Non-Polymers*Number of molecules25
Total formula weight3446.1
All*Total formula weight91110.0
*Water molecules are not included.

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PDB entries from 2025-07-09

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