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7LNF

3'-deoxy modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(GDO))-3')polymer144422.72synthetic construct
2C, G, O, Q
(A, B)
[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATEnon-polymer349.24Chemie (LCC)
3D, R
(A, B)
[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATEnon-polymer375.22Chemie (LCG)
4E, S
(A, B)
3'-deoxy-guanosine 5'-monophosphatenon-polymer347.22Chemie (GDO)
5F, N
(A, B)
4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2,5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN-2(1H)-ONEnon-polymer269.32Chemie (LKC)
6H, P
(A, B)
DIGUANOSINE-5'-TRIPHOSPHATEnon-polymer788.42Chemie (GP3)
7I, J, K, L, T...
(A, B)
MAGNESIUM IONnon-polymer24.38Chemie (MG)
8M, X
(A, B)
COBALT (II) IONnon-polymer58.92Chemie (CO)
9Y, Z
(A, B)
waterwater18.0123Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight8845.4
Non-Polymers*Number of molecules22
Total formula weight5269.5
All*Total formula weight14114.8
*Water molecules are not included.

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PDB entries from 2025-06-25

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