7L8G
BG505 SOSIP.v5.2(7S) in complex with the polyclonal Fab pAbC-3 from animal Rh.33172 (Wk38 time point)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | C, D, E, F, A... | Envelope glycoprotein gp160 | polymer | 664 | 74672.8 | 6 | UniProt (Q2N0S5) Pfam (PF00516) Pfam (PF00517) UniProt (by SIFTS) (Q2N0S6) In PDB | Human immunodeficiency virus 1 | Env polyprotein |
2 | H | Rh.33172 pAbC-3 Heavy Chain | polymer | 109 | 9294.4 | 1 | Macaca mulatta (Rhesus monkey) | ||
3 | L | Rh.33172 pAbC-3 Light Chain | polymer | 100 | 8528.5 | 1 | Macaca mulatta (Rhesus monkey) | ||
4 | G, R, Y | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G22768VO) | |||
5 | a, b, c, d, e... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 22 | In PDB GlyTouCan (G42666HT) | |||
6 | E, F, C, A, D... | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 39 | Chemie (NAG) |
Sequence modifications
C, D, E, F, A, B: 31 - 664 (UniProt: Q2N0S5)
PDB | External Database | Details |
---|---|---|
Met -1 | - | initiating methionine |
Lys 0 | - | expression tag |
Arg 1 | - | expression tag |
Gly 2 | - | expression tag |
Leu 3 | - | expression tag |
Cys 4 | - | expression tag |
Cys 5 | - | expression tag |
Val 6 | - | expression tag |
Leu 7 | - | expression tag |
Leu 8 | - | expression tag |
Leu 9 | - | expression tag |
Cys 10 | - | expression tag |
Gly 11 | - | expression tag |
Ala 12 | - | expression tag |
Val 13 | - | expression tag |
Phe 14 | - | expression tag |
Val 15 | - | expression tag |
Ser 16 | - | expression tag |
Pro 17 | - | expression tag |
Ser 18 | - | expression tag |
Gln 19 | - | expression tag |
Glu 20 | - | expression tag |
Ile 21 | - | expression tag |
His 22 | - | expression tag |
Ala 23 | - | expression tag |
Arg 24 | - | expression tag |
Phe 25 | - | expression tag |
Arg 26 | - | expression tag |
Arg 27 | - | expression tag |
Gly 28 | - | expression tag |
Ala 29 | - | expression tag |
Arg 30 | - | expression tag |
Lys 64 | Glu 63 | conflict |
Cys 73 | Ala 72 | conflict |
Thr 240 | Pro 239 | conflict |
Asn 241 | Ser 240 | conflict |
Ile 271 | Met 270 | conflict |
Leu 288 | Phe 287 | conflict |
Glu 290 | Thr 289 | conflict |
Ser 291 | Pro 290 | conflict |
Val 304 | Arg 303 | conflict |
Trp 316 | Ala 313 | conflict |
Tyr 319 | Ala 316 | conflict |
Asn 332 | Thr 330 | conflict |
Cys 501 | Ala 498 | conflict |
Arg 509 | Glu 506 | conflict |
Arg 510 | Lys 507 | conflict |
Ser 519 | Phe 516 | conflict |
Pro 559 | Ile 556 | conflict |
Cys 561 | Ala 558 | conflict |
Asp 568 | Leu 565 | conflict |
His 570 | Val 567 | conflict |
His 585 | Arg 582 | conflict |
Cys 605 | Thr 602 | conflict |
Glu 662 | Ala 659 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 465859.9 | |
Branched | Number of molecules | 25 |
Total formula weight | 12069.3 | |
Non-Polymers* | Number of molecules | 39 |
Total formula weight | 8627.1 | |
All* | Total formula weight | 486556.3 |