7L8E
BG505 SOSIP.v5.2(7S) in complex with the polyclonal Fab pAbC-1 from animal Rh.33172 (Wk38 time point)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (C, D, E, F, A...) | Envelope glycoprotein gp160 | polymer | 664 | 74672.8 | 6 | UniProt (Q2N0S5) Pfam (PF00516) Pfam (PF00517) UniProt (by SIFTS) (Q2N0S6) | Human immunodeficiency virus 1 | Env polyprotein |
| 2 | G (H) | Rh.33172 pAbC-1 Heavy Chain | polymer | 111 | 9464.7 | 1 | Macaca mulatta (Rhesus monkey) | ||
| 3 | H (L) | Rh.33172 pAbC-1 Light Chain | polymer | 99 | 8443.4 | 1 | Macaca mulatta (Rhesus monkey) | ||
| 4 | I, Q, X (G, Q, X) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G22768VO) | |||
| 5 | AA, BA, CA, J, K... (a, b, c, I, J...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 18 | In PDB GlyTouCan (G42666HT) | |||
| 6 | AB, BB, CB, DA, DB... (E, C, F, A, D...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 44 | Chemie (NAG) |
Sequence modifications
C, D, E, F, A, B: 31 - 665 (UniProt: Q2N0S5)
| PDB | External Database | Details |
|---|---|---|
| Met -1 | - | initiating methionine |
| Lys 0 | - | expression tag |
| Arg 1 | - | expression tag |
| Gly 2 | - | expression tag |
| Leu 3 | - | expression tag |
| Cys 4 | - | expression tag |
| Cys 5 | - | expression tag |
| Val 6 | - | expression tag |
| Leu 7 | - | expression tag |
| Leu 8 | - | expression tag |
| Leu 9 | - | expression tag |
| Cys 10 | - | expression tag |
| Gly 11 | - | expression tag |
| Ala 12 | - | expression tag |
| Val 13 | - | expression tag |
| Phe 14 | - | expression tag |
| Val 15 | - | expression tag |
| Ser 16 | - | expression tag |
| Pro 17 | - | expression tag |
| Ser 18 | - | expression tag |
| Gln 19 | - | expression tag |
| Glu 20 | - | expression tag |
| Ile 21 | - | expression tag |
| His 22 | - | expression tag |
| Ala 23 | - | expression tag |
| Arg 24 | - | expression tag |
| Phe 25 | - | expression tag |
| Arg 26 | - | expression tag |
| Arg 27 | - | expression tag |
| Gly 28 | - | expression tag |
| Ala 29 | - | expression tag |
| Arg 30 | - | expression tag |
| Lys 64 | Glu 63 | conflict |
| Cys 73 | Ala 72 | conflict |
| Thr 240 | Pro 239 | conflict |
| Asn 241 | Ser 240 | conflict |
| Ile 271 | Met 270 | conflict |
| Leu 288 | Phe 287 | conflict |
| Glu 290 | Thr 289 | conflict |
| Ser 291 | Pro 290 | conflict |
| Val 304 | Arg 303 | conflict |
| Trp 316 | Ala 313 | conflict |
| Tyr 319 | Ala 316 | conflict |
| Asn 332 | Thr 330 | conflict |
| Cys 501 | Ala 498 | conflict |
| Arg 510 | Glu 506 | conflict |
| Arg 511 | Lys 507 | conflict |
| Ser 520 | Phe 516 | conflict |
| Pro 560 | Ile 556 | conflict |
| Cys 562 | Ala 558 | conflict |
| Asp 569 | Leu 565 | conflict |
| His 571 | Val 567 | conflict |
| His 586 | Arg 582 | conflict |
| Cys 606 | Thr 602 | conflict |
| Glu 663 | Ala 659 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 465945.0 | |
| Branched | Number of molecules | 21 |
| Total formula weight | 10371.7 | |
| Non-Polymers* | Number of molecules | 44 |
| Total formula weight | 9733.2 | |
| All* | Total formula weight | 486049.9 |
