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7KHI

Escherichia coli RNA polymerase and rrnBP1 promoter complex with DksA/ppGpp

Replaces:  6WRD
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
DNA-directed RNA polymerase subunit alphapolymer23626114.72UniProt (P0A7Z4)
Pfam (PF01193)
Pfam (PF01000)
Escherichia coli (strain K12)RNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha
2C
(C)
DNA-directed RNA polymerase subunit betapolymer1342150820.91UniProt (P0A8V2)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF10385)
Pfam (PF00562)
Pfam (PF04560)
Escherichia coli (strain K12)RNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta
3D
(D)
DNA-directed RNA polymerase subunit beta'polymer1407155366.81UniProt (P0A8T7)
Pfam (PF04997)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
Escherichia coli (strain K12)RNAP subunit beta',RNA polymerase subunit beta',Transcriptase subunit beta'
4E
(E)
DNA-directed RNA polymerase subunit omegapolymer9110249.51UniProt (P0A800)
Pfam (PF01192)
Escherichia coli (strain K12)RNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega
5F
(F)
RNA polymerase sigma factor RpoDpolymer61370352.21UniProt (P00579)
Pfam (PF03979)
Pfam (PF00140)
Pfam (PF04546)
Pfam (PF04542)
Pfam (PF04539)
Pfam (PF04545)
Escherichia coli (strain K12)Sigma-70
6G
(X)
DNA (36-MER)polymer3610988.11Escherichia coli K-12
7H
(Y)
DNA (28-MER)polymer288719.61Escherichia coli K-12
8I
(M)
RNA polymerase-binding transcription factor DksApolymer15117554.81UniProt (P0ABS1)
Pfam (PF21157)
Pfam (PF01258)
Escherichia coli (strain K12)DnaK suppressor protein
9J, K, P, Q
(C, D, F)
CHAPSOnon-polymer631.94Chemie (1N7)
10L
(D)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
11M, N, R
(D, M)
ZINC IONnon-polymer65.43Chemie (ZN)
12O, S
(D, M)
GUANOSINE-5',3'-TETRAPHOSPHATEnon-polymer603.22Chemie (G4P)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains9
Total formula weight476281.3
Non-Polymers*Number of molecules10
Total formula weight3954.4
All*Total formula weight480235.7
*Water molecules are not included.

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PDB entries from 2024-10-30

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