7KFR
Adeno-Associated Virus (AAV-DJ) - cryo-EM structure at 1.56 Angstrom Resolution
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Capsid protein VP1 | polymer | 521 | 58877.8 | 1 | UniProt (Q6JC41) Pfam (PF00740) In PDB | Adeno-associated virus | |
| 2 | A | MAGNESIUM ION | non-polymer | 24.3 | 3 | Chemie (MG) | |||
| 3 | water | water | 18.0 | 265 | Chemie (HOH) |
Sequence modifications
A: 217 - 737 (UniProt: Q6JC41)
| PDB | External Database | Details |
|---|---|---|
| Asn 262 | - | insertion |
| Thr 264 | Gln 263 | conflict |
| Gly 266 | - | insertion |
| Ser 268 | Ala 266 | conflict |
| Ala 273 | His 271 | conflict |
| Ser 314 | Asn 312 | conflict |
| Glu 329 | Asp 327 | conflict |
| Lys 332 | Thr 330 | conflict |
| Ile 342 | Val 340 | conflict |
| Ile 374 | Val 372 | conflict |
| Gln 412 | Thr 410 | conflict |
| Thr 414 | Ser 412 | conflict |
| Gln 451 | Asn 449 | conflict |
| Thr 453 | Pro 451 | conflict |
| Gly 454 | Ser 452 | conflict |
| Asn 458 | Thr 456 | conflict |
| Thr 459 | Gln 457 | conflict |
| Gln 460 | Ser 458 | conflict |
| Thr 461 | Arg 459 | conflict |
| Gly 463 | Gln 461 | conflict |
| Gly 467 | Ala 465 | conflict |
| Pro 469 | Ala 467 | conflict |
| Asn 470 | Ser 468 | conflict |
| Thr 471 | Asp 469 | conflict |
| Met 472 | Ile 470 | conflict |
| Ala 473 | Arg 471 | conflict |
| Asn 474 | Asp 472 | conflict |
| Ala 476 | Ser 474 | conflict |
| Lys 477 | Arg 475 | conflict |
| Arg 587 | Gly 585 | conflict |
| Arg 590 | Thr 588 | conflict |
| Asp 658 | Asn 656 | conflict |
| Pro 660 | Ser 658 | conflict |
| Asn 664 | Ser 662 | conflict |
| Gln 665 | Ala 663 | conflict |
| Ser 666 | Ala 664 | conflict |
| Leu 668 | Phe 666 | conflict |
| Asn 669 | Ala 667 | conflict |
| Tyr 707 | Asn 705 | conflict |
| Thr 710 | Val 708 | conflict |
| Ser 711 | Asn 709 | conflict |
| Ala 715 | Thr 713 | conflict |
| Asn 717 | Asp 715 | conflict |
| Glu 719 | Asn 717 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 58877.8 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 72.9 | |
| All* | Total formula weight | 58950.7 |
