7K9J
SARS-CoV-2 Spike in complex with neutralizing Fab 2H04 (three down conformation)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1256 | 139316.4 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
2 | H, I, J | 2H04 heavy chain | polymer | 121 | 13448.8 | 3 | Mus musculus (Mouse) | ||
3 | L, M, N | 2H04 light chain | polymer | 106 | 11460.6 | 3 | Mus musculus (Mouse) | ||
4 | D, j, E, k, l... | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 12 | In PDB GlyTouCan (G15407YE) | |||
5 | a, d, e, f, h... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 21 | In PDB GlyTouCan (G42666HT) | |||
6 | b, K, p | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 3 | In PDB GlyTouCan (G32152BH) | |||
7 | c, O, q | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 3 | In PDB GlyTouCan (G86851RC) | |||
8 | g, S, u | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 3 | In PDB GlyTouCan (G22573RC) | |||
9 | B, C, A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1213 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
- | Arg 682 | deletion |
- | Arg 683 | deletion |
- | Ala 684 | deletion |
Ala 685 | Arg 685 | engineered mutation |
Pro 986 | Lys 986 | engineered mutation |
Pro 987 | Val 987 | engineered mutation |
Ser 1214 | - | expression tag |
Gly 1215 | - | expression tag |
Arg 1216 | - | expression tag |
Leu 1217 | - | expression tag |
Val 1218 | - | expression tag |
Pro 1219 | - | expression tag |
Arg 1220 | - | expression tag |
Gly 1221 | - | expression tag |
Ser 1222 | - | expression tag |
Pro 1223 | - | expression tag |
Gly 1224 | - | expression tag |
Ser 1225 | - | expression tag |
Gly 1226 | - | expression tag |
Tyr 1227 | - | expression tag |
Ile 1228 | - | expression tag |
Pro 1229 | - | expression tag |
Glu 1230 | - | expression tag |
Ala 1231 | - | expression tag |
Pro 1232 | - | expression tag |
Arg 1233 | - | expression tag |
Asp 1234 | - | expression tag |
Gly 1235 | - | expression tag |
Gln 1236 | - | expression tag |
Ala 1237 | - | expression tag |
Tyr 1238 | - | expression tag |
Val 1239 | - | expression tag |
Arg 1240 | - | expression tag |
Lys 1241 | - | expression tag |
Asp 1242 | - | expression tag |
Gly 1243 | - | expression tag |
Glu 1244 | - | expression tag |
Trp 1245 | - | expression tag |
Val 1246 | - | expression tag |
Leu 1247 | - | expression tag |
Leu 1248 | - | expression tag |
Ser 1249 | - | expression tag |
Thr 1250 | - | expression tag |
Phe 1251 | - | expression tag |
Leu 1252 | - | expression tag |
Gly 1253 | - | expression tag |
His 1254 | - | expression tag |
His 1255 | - | expression tag |
His 1256 | - | expression tag |
His 1257 | - | expression tag |
His 1258 | - | expression tag |
His 1259 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 492677.4 | |
Branched | Number of molecules | 42 |
Total formula weight | 21497.1 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 663.6 | |
All* | Total formula weight | 514838.1 |