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7K6P

Active state Dot1 bound to the unacetylated H4 nucleosome

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(A, E)
Histone H3.2polymer9811562.62UniProt (P84233)
Pfam (PF00125)
Xenopus laevis (African clawed frog)
2B, F
(B, F)
Histone H4polymer9010176.02UniProt (P62799)
Pfam (PF15511)
Xenopus laevis (African clawed frog)
3C, G
(C, G)
Histone H2A type 1polymer10711694.62UniProt (P06897)
Pfam (PF00125)
Pfam (PF16211)
Xenopus laevis (African clawed frog)
4D, H
(D, H)
Histone H2B 1.1polymer9310322.82UniProt (P02281)
Pfam (PF00125)
Xenopus laevis (African clawed frog)H2B1.1
5I
(I)
DNA (146-MER)polymer14644824.61synthetic construct
6J
(J)
DNA (146-MER)polymer14645304.91synthetic construct
7K
(K)
Histone-lysine N-methyltransferase, H3 lysine-79 specificpolymer40646686.11UniProt (Q04089)
Pfam (PF08123)
Saccharomyces cerevisiae (Baker's yeast)Disrupter of telomere silencing protein 1,Histone H3-K79 methyltransferase,H3-K79-HMTase,Lysine N-methyltransferase 4
8L
(L)
Ubiquitinpolymer768622.91UniProt (P0CG48)
Pfam (PF00240)
Homo sapiens (Human)
9M
(K)
S-ADENOSYLMETHIONINEnon-polymer398.41Chemie (SAM)
Sequence modifications
A, E: 37 - 134 (UniProt: P84233)
PDBExternal DatabaseDetails
Met 79Lys 80engineered mutation
Ala 102Gly 103engineered mutation
C, G: 12 - 118 (UniProt: P06897)
PDBExternal DatabaseDetails
Arg 99Gly 100engineered mutation
D, H: 32 - 124 (UniProt: P02281)
PDBExternal DatabaseDetails
Thr 32Ser 33engineered mutation
Cys 120Lys 121engineered mutation
K: 176 - 580 (UniProt: Q04089)
PDBExternal DatabaseDetails
Met 581-expression tag
L: 1 - 76 (UniProt: P0CG48)
PDBExternal DatabaseDetails
Cys 76Gly 76engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight232950.4
Non-Polymers*Number of molecules1
Total formula weight398.4
All*Total formula weight233348.8
*Water molecules are not included.

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PDB entries from 2025-06-11

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