7JV2
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | H | S2H13 Fab heavy chain | polymer | 120 | 13086.4 | 1 | Homo sapiens (Human) | ||
2 | L | S2H13 Fab light chain | polymer | 110 | 11526.8 | 1 | Homo sapiens (Human) | ||
3 | A | Spike glycoprotein | polymer | 1281 | 141532.8 | 1 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein,SARS-CoV-2 spike glycoprotein |
Sequence modifications
A: 14 - 1211 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Met -18 | - | expression tag |
Gly -17 | - | expression tag |
Ile -16 | - | expression tag |
Leu -15 | - | expression tag |
Pro -14 | - | expression tag |
Ser -13 | - | expression tag |
Pro -12 | - | expression tag |
Gly -11 | - | expression tag |
Met -10 | - | expression tag |
Pro -9 | - | expression tag |
Ala -8 | - | expression tag |
Leu -7 | - | expression tag |
Leu -6 | - | expression tag |
Ser -5 | - | expression tag |
Leu -4 | - | expression tag |
Val -3 | - | expression tag |
Ser -2 | - | expression tag |
Leu -1 | - | expression tag |
Leu 0 | - | expression tag |
Ser 1 | - | expression tag |
Val 2 | - | expression tag |
Leu 3 | - | expression tag |
Leu 4 | - | expression tag |
Met 5 | - | expression tag |
Gly 6 | - | expression tag |
Cys 7 | - | expression tag |
Val 8 | - | expression tag |
Ala 9 | - | expression tag |
Glu 10 | - | expression tag |
Thr 11 | - | expression tag |
Gly 12 | - | expression tag |
Thr 13 | - | expression tag |
Ser 682 | Arg 682 | engineered mutation |
Gly 683 | Arg 683 | engineered mutation |
Gly 685 | Arg 685 | engineered mutation |
Pro 986 | Lys 986 | engineered mutation |
Pro 987 | Val 987 | engineered mutation |
Gly 1212 | - | expression tag |
Ser 1213 | - | expression tag |
Gly 1214 | - | expression tag |
Arg 1215 | - | expression tag |
Glu 1216 | - | expression tag |
Asn 1217 | - | expression tag |
Leu 1218 | - | expression tag |
Tyr 1219 | - | expression tag |
Phe 1220 | - | expression tag |
Gln 1221 | - | expression tag |
Gly 1222 | - | expression tag |
Gly 1223 | - | expression tag |
Gly 1224 | - | expression tag |
Gly 1225 | - | expression tag |
Ser 1226 | - | expression tag |
Gly 1227 | - | expression tag |
Tyr 1228 | - | expression tag |
Ile 1229 | - | expression tag |
Pro 1230 | - | expression tag |
Glu 1231 | - | expression tag |
Ala 1232 | - | expression tag |
Pro 1233 | - | expression tag |
Arg 1234 | - | expression tag |
Asp 1235 | - | expression tag |
Gly 1236 | - | expression tag |
Gln 1237 | - | expression tag |
Ala 1238 | - | expression tag |
Tyr 1239 | - | expression tag |
Val 1240 | - | expression tag |
Arg 1241 | - | expression tag |
Lys 1242 | - | expression tag |
Asp 1243 | - | expression tag |
Gly 1244 | - | expression tag |
Glu 1245 | - | expression tag |
Trp 1246 | - | expression tag |
Val 1247 | - | expression tag |
Leu 1248 | - | expression tag |
Leu 1249 | - | expression tag |
Ser 1250 | - | expression tag |
Thr 1251 | - | expression tag |
Phe 1252 | - | expression tag |
Leu 1253 | - | expression tag |
Gly 1254 | - | expression tag |
His 1255 | - | expression tag |
His 1256 | - | expression tag |
His 1257 | - | expression tag |
His 1258 | - | expression tag |
His 1259 | - | expression tag |
His 1260 | - | expression tag |
His 1261 | - | expression tag |
His 1262 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 166146.0 | |
All* | Total formula weight | 166146.0 |