7FBJ
Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing nanobody 17F6
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C, E, G, I... | Spike protein S1 | polymer | 230 | 25623.5 | 8 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | |
2 | B, D, F, H, J... | New antigen receptor variable domain | polymer | 127 | 13892.4 | 8 | Chiloscyllium plagiosum | ||
3 | Q, R, T, U | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 4 | In PDB GlyTouCan (G42666HT) | |||
4 | S | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
5 | A, C, E | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
6 | water | water | 18.0 | 12 | Chemie (HOH) |
Sequence modifications
A, C, E, G, I, K, M, O: 332 - 527 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Asp 326 | - | expression tag |
Ala 327 | - | expression tag |
Ala 328 | - | expression tag |
Gln 329 | - | expression tag |
Pro 330 | - | expression tag |
Ala 331 | - | expression tag |
Ala 528 | - | expression tag |
Ala 529 | - | expression tag |
Ala 530 | - | expression tag |
Arg 531 | - | expression tag |
Gly 532 | - | expression tag |
Gly 533 | - | expression tag |
Pro 534 | - | expression tag |
Glu 535 | - | expression tag |
Gln 536 | - | expression tag |
Lys 537 | - | expression tag |
Leu 538 | - | expression tag |
Ile 539 | - | expression tag |
Ser 540 | - | expression tag |
Glu 541 | - | expression tag |
Glu 542 | - | expression tag |
Asp 543 | - | expression tag |
Leu 544 | - | expression tag |
Asn 545 | - | expression tag |
Ser 546 | - | expression tag |
Ala 547 | - | expression tag |
Val 548 | - | expression tag |
Asp 549 | - | expression tag |
His 550 | - | expression tag |
His 551 | - | expression tag |
His 552 | - | expression tag |
His 553 | - | expression tag |
His 554 | - | expression tag |
His 555 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 16 |
Total formula weight | 316127.6 | |
Branched | Number of molecules | 5 |
Total formula weight | 2284.1 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 663.6 | |
All* | Total formula weight | 319075.4 |