7F3K
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Y-box-binding protein 2 | polymer | 93 | 10205.4 | 1 | UniProt (Q9Y2T7) Pfam (PF00313) | Homo sapiens (Human) | Contrin,DNA-binding protein C,Dbpc,Germ cell-specific Y-box-binding protein,MSY2 homolog |
| 2 | B (B) | RNA (5'-R(*UP*CP*AP*UP*(5MC)P*U)-3') | polymer | 6 | 1827.1 | 1 | Homo sapiens | ||
| 3 | C, D (A) | SULFATE ION | non-polymer | 96.1 | 2 | Chemie (SO4) | |||
| 4 | E, F (A, B) | water | water | 18.0 | 125 | Chemie (HOH) |
Sequence modifications
A: 85 - 177 (UniProt: Q9Y2T7)
| PDB | External Database | Details |
|---|---|---|
| Thr 92 | Ile 92 | engineered mutation |
| Lys 93 | Gln 93 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 12032.6 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 192.1 | |
| All* | Total formula weight | 12224.7 |
