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7EGB

TFIID-based holo PIC on SCP promoter

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(0)
CDK-activating kinase assembly factor MAT1polymer30935874.01UniProt (P51948)
Pfam (PF17121)
Pfam (PF06391)
Homo sapiens (human)CDK7/cyclin-H assembly factor,Cyclin-G1-interacting protein,Menage a trois,RING finger protein 66,RING finger protein MAT1,p35,p36
2B
(1)
General transcription factor IIH subunit 1polymer54862116.51UniProt (P32780)
Pfam (PF08567)
Pfam (PF03909)
Homo sapiens (human)Basic transcription factor 2 62 kDa subunit,BTF2 p62,General transcription factor IIH polypeptide 1,TFIIH basal transcription factor complex p62 subunit
3C
(2)
General transcription factor IIH subunit 2polymer39544482.01UniProt (Q13888)
Pfam (PF04056)
Pfam (PF07975)
Homo sapiens (human)Basic transcription factor 2 44 kDa subunit,BTF2 p44,General transcription factor IIH polypeptide 2,TFIIH basal transcription factor complex p44 subunit
4D
(3)
General transcription factor IIH subunit 3polymer30834416.01UniProt (Q13889)
Pfam (PF03850)
Homo sapiens (human)Basic transcription factor 2 34 kDa subunit,BTF2 p34,General transcription factor IIH polypeptide 3,TFIIH basal transcription factor complex p34 subunit
5E
(4)
General transcription factor IIH subunit 4polymer46252245.21UniProt (Q92759)
Pfam (PF03849)
Pfam (PF18307)
Homo sapiens (human)Basic transcription factor 2 52 kDa subunit,BTF2 p52,General transcription factor IIH polypeptide 4,TFIIH basal transcription factor complex p52 subunit
6F
(5)
General transcription factor IIH subunit 5polymer718060.41UniProt (Q6ZYL4)
Pfam (PF06331)
Homo sapiens (human)General transcription factor IIH polypeptide 5,TFB5 ortholog,TFIIH basal transcription factor complex TTD-A subunit
7G
(6)
General transcription and DNA repair factor IIH helicase subunit XPBpolymer78289404.71UniProt (P19447)
Pfam (PF13625)
Pfam (PF04851)
Pfam (PF16203)
Homo sapiens (human)TFIIH subunit XPB,Basic transcription factor 2 89 kDa subunit,BTF2 p89,DNA excision repair protein ERCC-3,DNA repair protein complementing XP-B cells,TFIIH basal transcription factor complex 89 kDa subunit,TFIIH 89 kDa subunit,TFIIH p89,Xeroderma pigmentosum group B-complementing protein
8H
(7)
General transcription and DNA repair factor IIH helicase subunit XPDpolymer76087021.11UniProt (P18074)
Pfam (PF06733)
Pfam (PF06777)
Pfam (PF13307)
Homo sapiens (human)TFIIH subunit XPD,Basic transcription factor 2 80 kDa subunit,BTF2 p80,CXPD,DNA excision repair protein ERCC-2,DNA repair protein complementing XP-D cells,TFIIH basal transcription factor complex 80 kDa subunit,TFIIH 80 kDa subunit,TFIIH p80,Xeroderma pigmentosum group D-complementing protein
9I
(8)
Cyclin-dependent kinase 7polymer34639090.31UniProt (P50613)
Pfam (PF00069)
Homo sapiens (human)39 kDa protein kinase,p39 Mo15,CDK-activating kinase 1,Cell division protein kinase 7,Serine/threonine-protein kinase 1,TFIIH basal transcription factor complex kinase subunit
10J
(9)
Cyclin-Hpolymer32337695.51UniProt (P51946)
Pfam (PF00134)
Pfam (PF16899)
Homo sapiens (human)MO15-associated protein,p34,p37
11K
(A)
Transcription initiation factor TFIID subunit 1polymer1872212956.21UniProt (P21675)
Pfam (PF09247)
Pfam (PF12157)
Pfam (PF15288)
Pfam (PF00439)
Homo sapiens (human)Cell cycle gene 1 protein,TBP-associated factor 250 kDa,p250,Transcription initiation factor TFIID 250 kDa subunit,TAF(II)250,TAFII-250,TAFII250
12L
(B)
Transcription initiation factor TFIID subunit 2polymer1199137160.01UniProt (Q6P1X5)Homo sapiens (human)150 kDa cofactor of initiator function,RNA polymerase II TBP-associated factor subunit B,TBP-associated factor 150 kDa,Transcription initiation factor TFIID 150 kDa subunit,TAF(II)150,TAFII-150,TAFII150
13FA, M
(D, d)
Transcription initiation factor TFIID subunit 4polymer1085110221.92UniProt (O00268)
Pfam (PF07531)
Pfam (PF05236)
Homo sapiens (human)RNA polymerase II TBP-associated factor subunit C,TBP-associated factor 4,Transcription initiation factor TFIID 130 kDa subunit,TAF(II)130,TAFII-130,TAFII130,Transcription initiation factor TFIID 135 kDa subunit,TAF(II)135,TAFII-135,TAFII135
14GA, N
(E, e)
Transcription initiation factor TFIID subunit 5polymer80086932.12UniProt (Q15542)
Pfam (PF04494)
Pfam (PF00400)
Homo sapiens (human)Transcription initiation factor TFIID 100 kDa subunit,TAF(II)100,TAFII-100,TAFII100
15HA, O
(F, f)
Transcription initiation factor TFIID subunit 6polymer67772749.32UniProt (P49848)
Pfam (PF02969)
Pfam (PF07571)
Homo sapiens (human)RNA polymerase II TBP-associated factor subunit E,Transcription initiation factor TFIID 70 kDa subunit,TAF(II)70,TAFII-70,TAFII70,Transcription initiation factor TFIID 80 kDa subunit,TAF(II)80,TAFII-80,TAFII80
16P
(G)
Transcription initiation factor TFIID subunit 7polymer34940325.11UniProt (Q15545)
Pfam (PF04658)
Homo sapiens (human)RNA polymerase II TBP-associated factor subunit F,Transcription initiation factor TFIID 55 kDa subunit,TAF(II)55,TAFII-55,TAFII55
17Q
(H)
Transcription initiation factor TFIID subunit 8polymer31034304.41UniProt (Q7Z7C8)
Pfam (PF07524)
Pfam (PF10406)
Homo sapiens (human)Protein taube nuss,TBP-associated factor 43 kDa,TBP-associated factor 8,Transcription initiation factor TFIID 43 kDa subunit,TAFII-43,TAFII43,hTAFII43
18IA, R
(I, i)
Transcription initiation factor TFIID subunit 9polymer26429006.82UniProt (Q16594)
Pfam (PF02291)
Homo sapiens (human)RNA polymerase II TBP-associated factor subunit G,STAF31/32,Transcription initiation factor TFIID 31 kDa subunit,TAFII-31,TAFII31,Transcription initiation factor TFIID 32 kDa subunit,TAFII-32,TAFII32
19JA, S
(J, j)
Transcription initiation factor TFIID subunit 10polymer21821731.22UniProt (Q12962)
Pfam (PF03540)
Homo sapiens (human)STAF28,Transcription initiation factor TFIID 30 kDa subunit,TAF(II)30,TAFII-30,TAFII30
20LA, T
(L, l)
Transcription initiation factor TFIID subunit 12polymer16117948.52UniProt (Q16514)
Pfam (PF03847)
Homo sapiens (human)Transcription initiation factor TFIID 20/15 kDa subunits,TAFII-20/TAFII-15,TAFII20/TAFII15
21U
(O)
Transcription initiation factor IIA subunit 2polymer10912469.11UniProt (P52657)
Pfam (PF02268)
Pfam (PF02751)
Homo sapiens (human)General transcription factor IIA subunit 2,TFIIA p12 subunit,TFIIA-12,TFIIAS,Transcription initiation factor IIA gamma chain,TFIIA-gamma
22V
(P)
TATA-box-binding proteinpolymer33937729.91UniProt (P20226)
Pfam (PF00352)
Homo sapiens (human)TATA sequence-binding protein,TATA-binding factor,TATA-box factor,Transcription initiation factor TFIID TBP subunit
23W
(Q)
Transcription initiation factor IIA subunit 1polymer37641544.61UniProt (P52655)
Pfam (PF03153)
Homo sapiens (human)General transcription factor IIA subunit 1,TFIIAL,Transcription initiation factor TFIIA 42 kDa subunit,TFIIA-42
24X
(R)
Transcription initiation factor IIBpolymer31634877.91UniProt (Q00403)
Pfam (PF08271)
Pfam (PF00382)
Homo sapiens (human)General transcription factor TFIIB,S300-II
25Y
(S)
General transcription factor IIF subunit 1polymer51758343.61UniProt (P35269)
Pfam (PF05793)
Homo sapiens (human)General transcription factor IIF 74 kDa subunit,Transcription initiation factor IIF subunit alpha,TFIIF-alpha,Transcription initiation factor RAP74
26Z
(T)
General transcription factor IIF subunit 2polymer24928427.31UniProt (P13984)
Pfam (PF17683)
Pfam (PF02270)
Homo sapiens (human)ATP-dependent helicase GTF2F2,General transcription factor IIF 30 kDa subunit,Transcription initiation factor IIF subunit beta,TFIIF-beta,Transcription initiation factor RAP30
27AA
(U)
General transcription factor IIE subunit 1polymer43949516.11UniProt (P29083)
Pfam (PF02002)
Pfam (PF08271)
Pfam (PF11521)
Homo sapiens (human)General transcription factor IIE 56 kDa subunit,Transcription initiation factor IIE subunit alpha,TFIIE-alpha
28BA
(V)
Transcription initiation factor IIE subunit betapolymer29133106.81UniProt (P29084)
Pfam (PF02186)
Pfam (PF18121)
Homo sapiens (human)TFIIE-beta,General transcription factor IIE subunit 2
29CA
(X)
DNA (69-MER)polymer9429188.61Homo sapiens
30DA
(Y)
DNA (69-MER)polymer6921094.41Homo sapiens
31EA
(c)
Transcription initiation factor TFIID subunit 3polymer929103769.31UniProt (Q5VWG9)
Pfam (PF07524)
Pfam (PF00628)
Homo sapiens (human)140 kDa TATA box-binding protein-associated factor,TBP-associated factor 3,Transcription initiation factor TFIID 140 kDa subunit,TAF(II)140,TAF140,TAFII-140,TAFII140
32KA
(k)
Transcription initiation factor TFIID subunit 11polymer21123340.11UniProt (Q15544)
Pfam (PF04719)
Homo sapiens (human)TFIID subunit p30-beta,Transcription initiation factor TFIID 28 kDa subunit,TAF(II)28,TAFII-28,TAFII28
33MA
(m)
Transcription initiation factor TFIID subunit 13polymer12414307.11UniProt (Q15543)
Pfam (PF02269)
Homo sapiens (human)Transcription initiation factor TFIID 18 kDa subunit,TAF(II)18,TAFII-18,TAFII18
34NA
(o)
DNA-directed RNA polymerase II subunit RPB1polymer1970217420.01UniProt (P24928)
Pfam (PF05001)
Pfam (PF04997)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
Pfam (PF04992)
Pfam (PF04990)
Homo sapiens (human)RNA polymerase II subunit B1,DNA-directed RNA polymerase II subunit A,DNA-directed RNA polymerase III largest subunit,RNA-directed RNA polymerase II subunit RPB1
35OA
(p)
DNA-directed RNA polymerase subunit betapolymer1174134041.41UniProt (A0A4X1TVZ5)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF04566)
Pfam (PF04567)
Pfam (PF00562)
Pfam (PF04560)
Sus scrofa (pig)
36PA
(q)
DNA-directed RNA polymerase II subunit RPB3polymer27531439.11UniProt (I3LCH3)
Pfam (PF01193)
Pfam (PF01000)
Sus scrofa (pig)RNA polymerase II subunit C
37QA
(r)
DNA-directed RNA polymerase II subunit RPB4polymer14216331.31UniProt (A0A481BYI6)
Pfam (PF03874)
Sus scrofa (pig)DNA-directed RNA polymerase II subunit RPB4 isoform X1
38RA
(s)
DNA-directed RNA polymerase II subunit Epolymer21024644.31UniProt (A0A4X1VTX4)
Pfam (PF03871)
Pfam (PF01191)
Sus scrofa (pig)RPB5 homolog
39SA
(t)
DNA-directed RNA polymerase II subunit Fpolymer12714477.01UniProt (A0A4X1VEK9)
Pfam (PF01192)
Sus scrofa (pig)DNA-directed RNA polymerases I,II,and III subunit RPABC2,RPB6 homolog
40TA
(u)
DNA-directed RNA polymerase II subunit RPB7polymer17219314.31UniProt (A0A4X1VKG7)
Pfam (PF03876)
Pfam (PF00575)
Sus scrofa (pig)
41UA
(v)
DNA-directed RNA polymerases I, II, and III subunit RPABC3polymer15017162.31UniProt (A0A4X1ULF2)
Pfam (PF03870)
UniProt (by SIFTS) (I3LCB2)
Sus scrofa (pig)
42VA
(w)
DNA-directed RNA polymerase II subunit RPB9polymer12514541.21UniProt (P60899)
Pfam (PF02150)
Pfam (PF01096)
Sus scrofa (pig)RNA polymerase II subunit B9,DNA-directed RNA polymerase II subunit I,RNA polymerase II 14.5 kDa subunit,RPB14.5
43WA
(x)
RPB10polymer677655.11Sus scrofa (Pig)
44XA
(y)
RNA_pol_L_2 domain-containing proteinpolymer11713310.31UniProt (A0A4X1UK25)
Pfam (PF13656)
UniProt (by SIFTS) (F1RKE4)
Sus scrofa (pig)
45YA
(z)
RPB12polymer587018.21UniProt (A0A4X1TRS6)
Pfam (PF03604)
Sus scrofa (pig)
46AB, BB, CB, DB, EB...
(0, 2, 3, R, U...)
ZINC IONnon-polymer65.417Chemie (ZN)
47GB
(7)
IRON/SULFUR CLUSTERnon-polymer351.61Chemie (SF4)
48LB
(o)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains51
Total formula weight2597400.3
Non-Polymers*Number of molecules19
Total formula weight1487.9
All*Total formula weight2598888.2
*Water molecules are not included.

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PDB entries from 2025-06-11

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