7EDG
Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7), one RBD-up conformation 2
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1286 | 142662.8 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein |
2 | a, b, c, D, d... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 29 | In PDB GlyTouCan (G42666HT) | |||
3 | E | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
4 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 18 | Chemie (NAG) |
Sequence modifications
A, B, C: 16 - 1205 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Met -5 | - | initiating methionine |
Glu -4 | - | expression tag |
Thr -3 | - | expression tag |
Asp -2 | - | expression tag |
Thr -1 | - | expression tag |
Leu 0 | - | expression tag |
Leu 1 | - | expression tag |
Leu 2 | - | expression tag |
Trp 3 | - | expression tag |
Val 4 | - | expression tag |
Leu 5 | - | expression tag |
Leu 6 | - | expression tag |
Leu 7 | - | expression tag |
Trp 8 | - | expression tag |
Val 9 | - | expression tag |
Pro 10 | - | expression tag |
Gly 11 | - | expression tag |
Ser 12 | - | expression tag |
Thr 13 | - | expression tag |
Gly 14 | - | expression tag |
Asp 15 | - | expression tag |
- | His 69 | deletion |
- | Val 70 | deletion |
- | Tyr 144 | deletion |
Tyr 498 | Asn 501 | conflict |
Asp 567 | Ala 570 | conflict |
Gly 611 | Asp 614 | conflict |
His 678 | Pro 681 | conflict |
Ala 680 | Arg 683 | conflict |
Ala 682 | Arg 685 | conflict |
Ile 713 | Thr 716 | conflict |
Ala 979 | Ser 982 | conflict |
Pro 983 | Lys 986 | conflict |
Pro 984 | Val 987 | conflict |
His 1115 | Asp 1118 | conflict |
Glu 1206 | - | expression tag |
Phe 1207 | - | expression tag |
Gly 1208 | - | expression tag |
Ser 1209 | - | expression tag |
Gly 1210 | - | expression tag |
Gly 1211 | - | expression tag |
Tyr 1212 | - | expression tag |
Ile 1213 | - | expression tag |
Pro 1214 | - | expression tag |
Glu 1215 | - | expression tag |
Ala 1216 | - | expression tag |
Pro 1217 | - | expression tag |
Arg 1218 | - | expression tag |
Asp 1219 | - | expression tag |
Gly 1220 | - | expression tag |
Gln 1221 | - | expression tag |
Ala 1222 | - | expression tag |
Tyr 1223 | - | expression tag |
Val 1224 | - | expression tag |
Arg 1225 | - | expression tag |
Lys 1226 | - | expression tag |
Asp 1227 | - | expression tag |
Gly 1228 | - | expression tag |
Glu 1229 | - | expression tag |
Trp 1230 | - | expression tag |
Val 1231 | - | expression tag |
Leu 1232 | - | expression tag |
Leu 1233 | - | expression tag |
Ser 1234 | - | expression tag |
Thr 1235 | - | expression tag |
Phe 1236 | - | expression tag |
Leu 1237 | - | expression tag |
Lys 1238 | - | expression tag |
Gly 1239 | - | expression tag |
Gln 1240 | - | expression tag |
Asp 1241 | - | expression tag |
Asn 1242 | - | expression tag |
Ser 1243 | - | expression tag |
Ala 1244 | - | expression tag |
Asp 1245 | - | expression tag |
Ile 1246 | - | expression tag |
Gln 1247 | - | expression tag |
His 1248 | - | expression tag |
Ser 1249 | - | expression tag |
Gly 1250 | - | expression tag |
Arg 1251 | - | expression tag |
Pro 1252 | - | expression tag |
Leu 1253 | - | expression tag |
Glu 1254 | - | expression tag |
Ser 1255 | - | expression tag |
Arg 1256 | - | expression tag |
Gly 1257 | - | expression tag |
Pro 1258 | - | expression tag |
Phe 1259 | - | expression tag |
Glu 1260 | - | expression tag |
Gln 1261 | - | expression tag |
Lys 1262 | - | expression tag |
Leu 1263 | - | expression tag |
Ile 1264 | - | expression tag |
Ser 1265 | - | expression tag |
Glu 1266 | - | expression tag |
Glu 1267 | - | expression tag |
Asp 1268 | - | expression tag |
Leu 1269 | - | expression tag |
Asn 1270 | - | expression tag |
Met 1271 | - | expression tag |
His 1272 | - | expression tag |
Thr 1273 | - | expression tag |
Gly 1274 | - | expression tag |
His 1275 | - | expression tag |
His 1276 | - | expression tag |
His 1277 | - | expression tag |
His 1278 | - | expression tag |
His 1279 | - | expression tag |
His 1280 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 427988.4 | |
Branched | Number of molecules | 30 |
Total formula weight | 12894.2 | |
Non-Polymers* | Number of molecules | 18 |
Total formula weight | 3981.7 | |
All* | Total formula weight | 444864.3 |