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7EDG

Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7), one RBD-up conformation 2

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, CSpike glycoproteinpolymer1286142662.83UniProt (P0DTC2)
Pfam (PF16451)
Pfam (PF09408)
Pfam (PF19209)
Pfam (PF01601)
In PDB
Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2)S glycoprotein,E2,Peplomer protein
2a, b, c, D, d...2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.429In PDB
GlyTouCan (G42666HT)
3Ebeta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched586.51In PDB
GlyTouCan (G15407YE)
4A, B, C2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.218Chemie (NAG)
Sequence modifications
A, B, C: 16 - 1205 (UniProt: P0DTC2)
PDBExternal DatabaseDetails
Met -5-initiating methionine
Glu -4-expression tag
Thr -3-expression tag
Asp -2-expression tag
Thr -1-expression tag
Leu 0-expression tag
Leu 1-expression tag
Leu 2-expression tag
Trp 3-expression tag
Val 4-expression tag
Leu 5-expression tag
Leu 6-expression tag
Leu 7-expression tag
Trp 8-expression tag
Val 9-expression tag
Pro 10-expression tag
Gly 11-expression tag
Ser 12-expression tag
Thr 13-expression tag
Gly 14-expression tag
Asp 15-expression tag
-His 69deletion
-Val 70deletion
-Tyr 144deletion
Tyr 498Asn 501conflict
Asp 567Ala 570conflict
Gly 611Asp 614conflict
His 678Pro 681conflict
Ala 680Arg 683conflict
Ala 682Arg 685conflict
Ile 713Thr 716conflict
Ala 979Ser 982conflict
Pro 983Lys 986conflict
Pro 984Val 987conflict
His 1115Asp 1118conflict
Glu 1206-expression tag
Phe 1207-expression tag
Gly 1208-expression tag
Ser 1209-expression tag
Gly 1210-expression tag
Gly 1211-expression tag
Tyr 1212-expression tag
Ile 1213-expression tag
Pro 1214-expression tag
Glu 1215-expression tag
Ala 1216-expression tag
Pro 1217-expression tag
Arg 1218-expression tag
Asp 1219-expression tag
Gly 1220-expression tag
Gln 1221-expression tag
Ala 1222-expression tag
Tyr 1223-expression tag
Val 1224-expression tag
Arg 1225-expression tag
Lys 1226-expression tag
Asp 1227-expression tag
Gly 1228-expression tag
Glu 1229-expression tag
Trp 1230-expression tag
Val 1231-expression tag
Leu 1232-expression tag
Leu 1233-expression tag
Ser 1234-expression tag
Thr 1235-expression tag
Phe 1236-expression tag
Leu 1237-expression tag
Lys 1238-expression tag
Gly 1239-expression tag
Gln 1240-expression tag
Asp 1241-expression tag
Asn 1242-expression tag
Ser 1243-expression tag
Ala 1244-expression tag
Asp 1245-expression tag
Ile 1246-expression tag
Gln 1247-expression tag
His 1248-expression tag
Ser 1249-expression tag
Gly 1250-expression tag
Arg 1251-expression tag
Pro 1252-expression tag
Leu 1253-expression tag
Glu 1254-expression tag
Ser 1255-expression tag
Arg 1256-expression tag
Gly 1257-expression tag
Pro 1258-expression tag
Phe 1259-expression tag
Glu 1260-expression tag
Gln 1261-expression tag
Lys 1262-expression tag
Leu 1263-expression tag
Ile 1264-expression tag
Ser 1265-expression tag
Glu 1266-expression tag
Glu 1267-expression tag
Asp 1268-expression tag
Leu 1269-expression tag
Asn 1270-expression tag
Met 1271-expression tag
His 1272-expression tag
Thr 1273-expression tag
Gly 1274-expression tag
His 1275-expression tag
His 1276-expression tag
His 1277-expression tag
His 1278-expression tag
His 1279-expression tag
His 1280-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight427988.4
BranchedNumber of molecules30
Total formula weight12894.2
Non-Polymers*Number of molecules18
Total formula weight3981.7
All*Total formula weight444864.3
*Water molecules are not included.

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PDB entries from 2024-07-17

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