7E9L
Crystal Structure of POMGNT2 in complex with UDP and mono-mannosyl peptide (379Man short peptide)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 | polymer | 539 | 61563.9 | 2 | UniProt (Q5NDF2) Pfam (PF04577) | Bos taurus (Bovine) | POMGnT2,Extracellular O-linked N-acetylglucosamine transferase-like,Glycosyltransferase-like domain-containing protein 2 |
| 2 | C (C) | mono-mannosyl peptide (379Man short peptide) | polymer | 14 | 1333.5 | 1 | UniProt (by SIFTS) (Q14118) | Homo sapiens | |
| 3 | D (D) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 4 | E, F, I, J, K (A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 5 | Chemie (NAG) | |||
| 5 | G, L (A, B) | URIDINE-5'-DIPHOSPHATE | non-polymer | 404.2 | 2 | Chemie (UDP) | |||
| 6 | H (A) | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | non-polymer | 122.1 | 1 | Chemie (TRS) | |||
| 7 | M (C) | alpha-D-mannopyranose | non-polymer | 180.2 | 1 | Chemie (MAN) | |||
| 8 | N, O, P (A, B, C) | water | water | 18.0 | 465 | Chemie (HOH) |
Sequence modifications
A, B: 45 - 580 (UniProt: Q5NDF2)
| PDB | External Database | Details |
|---|---|---|
| Gly 42 | - | expression tag |
| Ala 43 | - | expression tag |
| Pro 44 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 124461.3 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 424.4 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 2216.7 | |
| All* | Total formula weight | 127102.4 |
