7DX8
Trypsin-digested S protein of SARS-CoV-2 bound with PD of ACE2 in the conformation 2 (2 up RBD and 2 PD bound)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1283 | 142502.6 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
| 2 | D, E (D, E) | Angiotensin-converting enzyme 2 | polymer | 817 | 93971.3 | 2 | UniProt (Q9BYF1) Pfam (PF01401) Pfam (PF16959) | Homo sapiens (Human) | ACE-related carboxypeptidase,Angiotensin-converting enzyme homolog,ACEH,Metalloprotease MPROT15 |
| 3 | AA, BA, CA, DA, EA... (a, b, c, d, e...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 32 | In PDB GlyTouCan (G42666HT) | |||
| 4 | AB, BB, CB, DB, EB... (B, C, A, D, E) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 29 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1273 (UniProt: P0DTC2)
D, E: -6 - 805 (UniProt: Q9BYF1)
| PDB | External Database | Details |
|---|---|---|
| Pro 986 | Lys 986 | engineered mutation |
| Pro 987 | Val 987 | engineered mutation |
| Leu 1274 | - | expression tag |
| Glu 1275 | - | expression tag |
| Asp 1276 | - | expression tag |
| Tyr 1277 | - | expression tag |
| Lys 1278 | - | expression tag |
| Asp 1279 | - | expression tag |
| Asp 1280 | - | expression tag |
| Asp 1281 | - | expression tag |
| Asp 1282 | - | expression tag |
| Lys 1283 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met -11 | - | expression tag |
| Ala -10 | - | expression tag |
| Ser -9 | - | expression tag |
| Gly -8 | - | expression tag |
| Arg -7 | - | expression tag |
| Trp 10 | - | insertion |
| Ser 11 | - | insertion |
| His 12 | - | insertion |
| Pro 13 | - | insertion |
| Gln 14 | - | insertion |
| Phe 15 | - | insertion |
| Glu 16 | - | insertion |
| Lys 17 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 615450.3 | |
| Branched | Number of molecules | 32 |
| Total formula weight | 13580.8 | |
| Non-Polymers* | Number of molecules | 29 |
| Total formula weight | 6415.0 | |
| All* | Total formula weight | 635446.2 |
