7DKJ

Hemagglutinin Influenza A virus (A/Okuda/1957(H2N2) bound with a neutralizing antibody

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, D, G (A, E, I)	Hemagglutinin	polymer	599	67423.8	3	UniProt (A0A0A7E4R0) Pfam (PF00509)	Influenza A virus (A/Okuda/1957(H2N2))
2	B, E, H (C, G, K)	Fv-clasp heavy chain	polymer	203	23083.9	3		Mus musculus
3	C, F, I (D, H, L)	Fv-clasp light chain	polymer	189	21287.7	3		Mus musculus
4	J, K, L, M, N... (B, F, J, M, N...)	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		586.5	6	In PDB GlyTouCan (G15407YE)
5	P, Q, R, S, T... (A, E, I)	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	9	Chemie (NAG)

Sequence modifications

A, E, I: 3 - 503 (UniProt: A0A0A7E4R0)

PDB	External Database	Details
Met -35	-	initiating methionine
Leu -34	-	expression tag
Leu -33	-	expression tag
Val -32	-	expression tag
Asn -31	-	expression tag
Gln -30	-	expression tag
Ser -29	-	expression tag
His -28	-	expression tag
Gln -27	-	expression tag
Gly -26	-	expression tag
Phe -25	-	expression tag
Asn -24	-	expression tag
Lys -23	-	expression tag
Glu -22	-	expression tag
His -21	-	expression tag
Thr -20	-	expression tag
Ser -19	-	expression tag
Lys -18	-	expression tag
Met -17	-	expression tag
Val -16	-	expression tag
Ser -15	-	expression tag
Ala -14	-	expression tag
Ile -13	-	expression tag
Val -12	-	expression tag
Leu -11	-	expression tag
Tyr -10	-	expression tag
Val -9	-	expression tag
Leu -8	-	expression tag
Leu -7	-	expression tag
Ala -6	-	expression tag
Ala -5	-	expression tag
Ala -4	-	expression tag
Ala -3	-	expression tag
His -2	-	expression tag
Ser -1	-	expression tag
Ala 0	-	expression tag
Phe 1	-	expression tag
Ala 2	-	expression tag
Cys 22	Leu 35	engineered mutation
Phe 93	Tyr 106	engineered mutation
Ser 98	Asn 111	engineered mutation
Cys 374	Gly 387	engineered mutation
Leu 504	-	expression tag
Val 505	-	expression tag
Pro 506	-	expression tag
Arg 507	-	expression tag
Gly 508	-	expression tag
Ser 509	-	expression tag
Pro 510	-	expression tag
Gly 511	-	expression tag
Ser 512	-	expression tag
Gly 513	-	expression tag
Tyr 514	-	expression tag
Ile 515	-	expression tag
Pro 516	-	expression tag
Glu 517	-	expression tag
Ala 518	-	expression tag
Pro 519	-	expression tag
Arg 520	-	expression tag
Asp 521	-	expression tag
Gly 522	-	expression tag
Gln 523	-	expression tag
Ala 524	-	expression tag
Tyr 525	-	expression tag
Val 526	-	expression tag
Arg 527	-	expression tag
Lys 528	-	expression tag
Asp 529	-	expression tag
Gly 530	-	expression tag
Glu 531	-	expression tag
Trp 532	-	expression tag
Val 533	-	expression tag
Leu 534	-	expression tag
Leu 535	-	expression tag
Ser 536	-	expression tag
Thr 537	-	expression tag
Phe 538	-	expression tag
Leu 539	-	expression tag
Gly 540	-	expression tag
Ser 541	-	expression tag
Gly 542	-	expression tag
Leu 543	-	expression tag
Asn 544	-	expression tag
Asp 545	-	expression tag
Ile 546	-	expression tag
Phe 547	-	expression tag
Glu 548	-	expression tag
Ala 549	-	expression tag
Gln 550	-	expression tag
Lys 551	-	expression tag
Ile 552	-	expression tag
Glu 553	-	expression tag
Trp 554	-	expression tag
His 555	-	expression tag
Glu 556	-	expression tag
Gly 557	-	expression tag
His 558	-	expression tag
His 559	-	expression tag
His 560	-	expression tag
His 561	-	expression tag
His 562	-	expression tag
His 563	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	9
	Total formula weight	335386.3
Branched	Number of molecules	6
	Total formula weight	3519.3
Non-Polymers*	Number of molecules	9
	Total formula weight	1990.9
All*	Total formula weight	340896.4

*Water molecules are not included.