7DEO
Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody scFv
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C | antibody scFv | polymer | 259 | 27654.7 | 2 | Homo sapiens | ||
2 | B, D | Spike protein S1 | polymer | 206 | 23159.9 | 2 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | |
3 | A, C | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) | |||
4 | B, D | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
5 | water | water | 18.0 | 325 | Chemie (HOH) |
Sequence modifications
B, D: 334 - 530 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Ala 531 | - | expression tag |
Ala 532 | - | expression tag |
Ala 533 | - | expression tag |
His 534 | - | expression tag |
His 535 | - | expression tag |
His 536 | - | expression tag |
His 537 | - | expression tag |
His 538 | - | expression tag |
His 539 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 101629.2 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 522.6 | |
All* | Total formula weight | 102151.8 |