7D0D
S protein of SARS-CoV-2 in complex bound with P5A-3C12_2B
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, G (A, C, B) | Spike glycoprotein | polymer | 1283 | 142502.6 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
| 2 | C, E (H, G) | Heavy chain of P5A-3C12 | polymer | 226 | 24203.3 | 2 | Homo sapiens (Human) | ||
| 3 | D, F (L, F) | Light chain of P5A-3C12 | polymer | 220 | 24268.9 | 2 | Homo sapiens (Human) | ||
| 4 | AA, BA, CA, H, I... (a, b, c, D, E...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 22 | In PDB GlyTouCan (G42666HT) | |||
| 5 | AB, BB, CB, DA, EA... (B, A, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 26 | Chemie (NAG) |
Sequence modifications
A, C, B: 1 - 1273 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Pro 986 | Lys 986 | engineered mutation |
| Pro 987 | Val 987 | engineered mutation |
| Leu 1274 | - | expression tag |
| Glu 1275 | - | expression tag |
| Asp 1276 | - | expression tag |
| Tyr 1277 | - | expression tag |
| Lys 1278 | - | expression tag |
| Asp 1279 | - | expression tag |
| Asp 1280 | - | expression tag |
| Asp 1281 | - | expression tag |
| Asp 1282 | - | expression tag |
| Lys 1283 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 7 |
| Total formula weight | 524452.1 | |
| Branched | Number of molecules | 22 |
| Total formula weight | 9336.8 | |
| Non-Polymers* | Number of molecules | 26 |
| Total formula weight | 5751.4 | |
| All* | Total formula weight | 539540.3 |
