7D03
S protein of SARS-CoV-2 in complex bound with FabP5A-2G7
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1283 | 142502.6 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
| 2 | D (H) | Immunoglobulin heavy variable 4-61,chain H of FabP5A-2G7,Epididymis luminal protein 214 | polymer | 458 | 50216.4 | 1 | UniProt (A0A0C4DH41) UniProt (V9HW68) Pfam (PF07686) Pfam (PF07654) | Homo sapiens (Human) | |
| 3 | E (L) | IGL c2312_light_IGLV2-14_IGLJ2,IGL@ protein | polymer | 217 | 22796.1 | 1 | UniProt (A0A5C2G2G8) UniProt (Q6IPQ0) Pfam (PF07654) Pfam (PF07686) | Homo sapiens (Human) | IGL c3114_light_IGLV2-14_IGLJ2,IGL c851_light_IGLV2-14_IGLJ2 |
| 4 | F, G, H, I, J... (D, E, F, G, I...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 20 | In PDB GlyTouCan (G42666HT) | |||
| 5 | AA, AB, BA, BB, CA... (A, C, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 29 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1273 (UniProt: P0DTC2)
H: 1 - 99 (UniProt: A0A0C4DH41)
H: 100 - 113 (PDB: 7D03)
H: 114 - 458 (UniProt: V9HW68)
L: 1 - 98 (UniProt: A0A5C2G2G8)
L: 99 - 217 (UniProt: Q6IPQ0)
| PDB | External Database | Details |
|---|---|---|
| Pro 986 | Lys 986 | conflict |
| Pro 987 | Val 987 | conflict |
| Leu 1274 | - | expression tag |
| Glu 1275 | - | expression tag |
| Asp 1276 | - | expression tag |
| Tyr 1277 | - | expression tag |
| Lys 1278 | - | expression tag |
| Asp 1279 | - | expression tag |
| Asp 1280 | - | expression tag |
| Asp 1281 | - | expression tag |
| Asp 1282 | - | expression tag |
| Lys 1283 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Asp 27 | Gly 46 | conflict |
H: 114 - 458 (UniProt: V9HW68)
L: 1 - 98 (UniProt: A0A5C2G2G8)
L: 99 - 217 (UniProt: Q6IPQ0)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 500520.3 | |
| Branched | Number of molecules | 20 |
| Total formula weight | 8488.0 | |
| Non-Polymers* | Number of molecules | 29 |
| Total formula weight | 6415.0 | |
| All* | Total formula weight | 515423.3 |
