7CZY
S protein of SARS-CoV-2 in complex bound with P5A-2F11_2B
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C | Spike glycoprotein | polymer | 1283 | 142502.6 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
| 2 | H, J | Immunoglobulin heavy variable 1-8,Immunoglobulin heavy variable 1-8,chain H of P5A-2F11_2B,Epididymis luminal protein 214,Epididymis luminal protein 214 | polymer | 452 | 49448.7 | 2 | UniProt (P0DP01) UniProt (V9HW68) Pfam (PF07686) Pfam (PF07654) In PDB | Homo sapiens (Human) | |
| 3 | K, N | IG c168_light_IGKV4-1_IGKJ4,Immunoglobulin kappa constant | polymer | 220 | 24158.8 | 2 | UniProt (A0A5C2G1U0) UniProt (P01834) Pfam (PF07654) Pfam (PF07686) In PDB | Homo sapiens (Human) | IGL c2410_light_IGKV4-1_IGKJ4,IGL c2520_light_IGKV4-1_IGKJ4,Ig kappa chain C region,Ig kappa chain C region AG,Ig kappa chain C region CUM,Ig kappa chain C region EU,Ig kappa chain C region OU,Ig kappa chain C region ROY,Ig kappa chain C region TI |
| 4 | a, b, D, E, F... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 21 | In PDB GlyTouCan (G42666HT) | |||
| 5 | c, d | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 627.6 | 2 | In PDB GlyTouCan (G47362BJ) | |||
| 6 | C, A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 28 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1273 (UniProt: P0DTC2)
H, J: 1 - 98 (UniProt: P0DP01)
H, J: 99 - 108 (PDB: 7CZY)
H, J: 109 - 452 (UniProt: V9HW68)
K, N: 1 - 113 (UniProt: A0A5C2G1U0)
K, N: 114 - 220 (UniProt: P01834)
| PDB | External Database | Details |
|---|---|---|
| Pro 986 | Lys 986 | conflict |
| Pro 987 | Val 987 | conflict |
| Leu 1274 | - | expression tag |
| Glu 1275 | - | expression tag |
| Asp 1276 | - | expression tag |
| Tyr 1277 | - | expression tag |
| Lys 1278 | - | expression tag |
| Asp 1279 | - | expression tag |
| Asp 1280 | - | expression tag |
| Asp 1281 | - | expression tag |
| Asp 1282 | - | expression tag |
| Lys 1283 | - | expression tag |
H, J: 99 - 108 (PDB: 7CZY)
H, J: 109 - 452 (UniProt: V9HW68)
K, N: 1 - 113 (UniProt: A0A5C2G1U0)
K, N: 114 - 220 (UniProt: P01834)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 7 |
| Total formula weight | 574722.7 | |
| Branched | Number of molecules | 23 |
| Total formula weight | 10167.6 | |
| Non-Polymers* | Number of molecules | 28 |
| Total formula weight | 6193.8 | |
| All* | Total formula weight | 591084.2 |
