7CZX
S protein of SARS-CoV-2 in complex bound with P5A-1B9
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1283 | 142502.6 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
2 | H, I, J | Immunoglobulin heavy variable 4-59,chain H of P5A-1B9,IGH@ protein | polymer | 458 | 50228.3 | 3 | UniProt (P01825) UniProt (Q6GMX6) Pfam (PF07686) Pfam (PF07654) In PDB | Homo sapiens (Human) | Ig heavy chain V-II region NEWM |
3 | K, M, N | IG c168_light_IGKV4-1_IGKJ4,Uncharacterized protein | polymer | 220 | 24158.8 | 3 | UniProt (A0A5C2G1U0) UniProt (Q8TCD0) Pfam (PF07686) Pfam (PF07654) In PDB | Homo sapiens (Human) | IGL c2410_light_IGKV4-1_IGKJ4,IGL c2520_light_IGKV4-1_IGKJ4 |
4 | a, b, D, E, F... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 19 | In PDB GlyTouCan (G42666HT) | |||
5 | C, A, M, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 33 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1273 (UniProt: P0DTC2)
H, I, J: 1 - 96 (UniProt: P01825)
H, I, J: 97 - 113 (PDB: 7CZX)
H, I, J: 114 - 458 (UniProt: Q6GMX6)
K, M, N: 1 - 110 (UniProt: A0A5C2G1U0)
K, M, N: 111 - 220 (UniProt: Q8TCD0)
PDB | External Database | Details |
---|---|---|
Pro 986 | Lys 986 | conflict |
Pro 987 | Val 987 | conflict |
Leu 1274 | - | expression tag |
Glu 1275 | - | expression tag |
Asp 1276 | - | expression tag |
Tyr 1277 | - | expression tag |
Lys 1278 | - | expression tag |
Asp 1279 | - | expression tag |
Asp 1280 | - | expression tag |
Asp 1281 | - | expression tag |
Asp 1282 | - | expression tag |
Lys 1283 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ser 52 | Tyr 71 | conflict |
Leu 71 | Val 90 | conflict |
H, I, J: 114 - 458 (UniProt: Q6GMX6)
PDB | External Database | Details |
---|---|---|
Leu 117 | Tyr 124 | conflict |
Arg 120 | Gln 127 | conflict |
K, M, N: 111 - 220 (UniProt: Q8TCD0)
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 650669.1 | |
Branched | Number of molecules | 19 |
Total formula weight | 8063.6 | |
Non-Polymers* | Number of molecules | 33 |
Total formula weight | 7299.9 | |
All* | Total formula weight | 666032.6 |