7CZX

S protein of SARS-CoV-2 in complex bound with P5A-1B9

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C (A, B, C)	Spike glycoprotein	polymer	1283	142502.6	3	UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601)	Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)	S glycoprotein,E2,Peplomer protein
2	D, F, H (H, I, J)	Immunoglobulin heavy variable 4-59,chain H of P5A-1B9,IGH@ protein	polymer	458	50228.3	3	UniProt (P01825) UniProt (Q6GMX6) Pfam (PF07686) Pfam (PF07654)	Homo sapiens (Human)	Ig heavy chain V-II region NEWM
3	E, G, I (K, M, N)	IG c168_light_IGKV4-1_IGKJ4,Uncharacterized protein	polymer	220	24158.8	3	UniProt (A0A5C2G1U0) UniProt (Q8TCD0) Pfam (PF07654) Pfam (PF07686)	Homo sapiens (Human)	IGL c2410_light_IGKV4-1_IGKJ4,IGL c2520_light_IGKV4-1_IGKJ4
4	AA, BA, J, K, L... (a, b, D, E, F...)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	19	In PDB GlyTouCan (G42666HT)
5	AB, BB, CA, CB, DA... (C, A, M, B)	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	33	Chemie (NAG)

Sequence modifications

A, B, C: 1 - 1273 (UniProt: P0DTC2)

H, I, J: 1 - 96 (UniProt: P01825)

PDB	External Database	Details
Ser 52	Tyr 71	conflict
Leu 71	Val 90	conflict

H, I, J: 97 - 113 (PDB: 7CZX)
H, I, J: 114 - 458 (UniProt: Q6GMX6)

PDB	External Database	Details
Leu 117	Tyr 124	conflict
Arg 120	Gln 127	conflict

K, M, N: 1 - 110 (UniProt: A0A5C2G1U0)
K, M, N: 111 - 220 (UniProt: Q8TCD0)

Sequence viewer

Contents of the asymmetric unit

*Water molecules are not included.