7CZW
S protein of SARS-CoV-2 in complex bound with P5A-2G7
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1283 | 142502.6 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
| 2 | D, F (H, J) | Immunoglobulin heavy variable 4-61,chain H of P5A-2G7,Epididymis luminal protein 214 | polymer | 458 | 50216.4 | 2 | UniProt (A0A0C4DH41) UniProt (V9HW68) Pfam (PF07686) Pfam (PF07654) | Homo sapiens (Human) | |
| 3 | E, G (L, N) | IGL c2312_light_IGLV2-14_IGLJ2,IGL@ protein | polymer | 217 | 22796.1 | 2 | UniProt (A0A5C2G2G8) UniProt (Q6IPQ0) Pfam (PF07654) Pfam (PF07686) | Homo sapiens (Human) | IGL c3114_light_IGLV2-14_IGLJ2,IGL c851_light_IGLV2-14_IGLJ2 |
| 4 | AA, BA, H, I, J... (a, b, D, E, F...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 21 | In PDB GlyTouCan (G42666HT) | |||
| 5 | AB, BB, CA, CB, DA... (C, A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 28 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1273 (UniProt: P0DTC2)
H, J: 1 - 99 (UniProt: A0A0C4DH41)
H, J: 100 - 114 (PDB: 7CZW)
H, J: 115 - 458 (UniProt: V9HW68)
L, N: 1 - 98 (UniProt: A0A5C2G2G8)
L, N: 99 - 217 (UniProt: Q6IPQ0)
| PDB | External Database | Details |
|---|---|---|
| Pro 986 | Lys 986 | conflict |
| Pro 987 | Val 987 | conflict |
| Leu 1274 | - | expression tag |
| Glu 1275 | - | expression tag |
| Asp 1276 | - | expression tag |
| Tyr 1277 | - | expression tag |
| Lys 1278 | - | expression tag |
| Asp 1279 | - | expression tag |
| Asp 1280 | - | expression tag |
| Asp 1281 | - | expression tag |
| Asp 1282 | - | expression tag |
| Lys 1283 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Asp 27 | Gly 46 | conflict |
H, J: 115 - 458 (UniProt: V9HW68)
L, N: 1 - 98 (UniProt: A0A5C2G2G8)
L, N: 99 - 217 (UniProt: Q6IPQ0)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 7 |
| Total formula weight | 573532.7 | |
| Branched | Number of molecules | 21 |
| Total formula weight | 8912.4 | |
| Non-Polymers* | Number of molecules | 28 |
| Total formula weight | 6193.8 | |
| All* | Total formula weight | 588639.0 |
