7CZS
S protein of SARS-CoV-2 in complex bound with P5A-1B8_3B
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1283 | 142502.6 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
| 2 | D, F, H (H, I, J) | IG c542_heavy_IGHV3-53_IGHD3-10_IGHJ6,IGH@ protein | polymer | 445 | 48619.7 | 3 | UniProt (A0A5C2GG81) UniProt (Q6GMX6) Pfam (PF07686) Pfam (PF07654) | Homo sapiens (Human) | |
| 3 | E, G, I (K, M, N) | IGL c4203_light_IGKV1-9_IGKJ4,Uncharacterized protein | polymer | 214 | 23218.8 | 3 | UniProt (A0A5C2GCZ2) UniProt (Q8TCD0) Pfam (PF07654) Pfam (PF07686) | Homo sapiens (Human) | |
| 4 | AA, BA, CA, J, K... (a, b, c, D, E...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 20 | In PDB GlyTouCan (G42666HT) | |||
| 5 | AB, BB, CB, DA, DB... (C, A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 31 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1273 (UniProt: P0DTC2)
H, I, J: 1 - 102 (UniProt: A0A5C2GG81)
H, I, J: 103 - 445 (UniProt: Q6GMX6)
K, M, N: 1 - 104 (UniProt: A0A5C2GCZ2)
K, M, N: 105 - 214 (UniProt: Q8TCD0)
| PDB | External Database | Details |
|---|---|---|
| Pro 986 | Lys 986 | conflict |
| Pro 987 | Val 987 | conflict |
| Leu 1274 | - | expression tag |
| Glu 1275 | - | expression tag |
| Asp 1276 | - | expression tag |
| Tyr 1277 | - | expression tag |
| Lys 1278 | - | expression tag |
| Asp 1279 | - | expression tag |
| Asp 1280 | - | expression tag |
| Asp 1281 | - | expression tag |
| Asp 1282 | - | expression tag |
| Lys 1283 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Pro 53 | Arg 53 | conflict |
| Gly 54 | Asp 54 | conflict |
| Phe 58 | Tyr 58 | conflict |
| Asn 83 | Ile 83 | conflict |
| Glu 98 | Ala 98 | conflict |
| Thr 99 | Ala 99 | conflict |
| Ala 101 | Trp 101 | conflict |
K, M, N: 1 - 104 (UniProt: A0A5C2GCZ2)
| PDB | External Database | Details |
|---|---|---|
| - | Ile 97 | deletion |
| Ala 97 | Thr 98 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 9 |
| Total formula weight | 643023.2 | |
| Branched | Number of molecules | 20 |
| Total formula weight | 8488.0 | |
| Non-Polymers* | Number of molecules | 31 |
| Total formula weight | 6857.4 | |
| All* | Total formula weight | 658368.6 |
