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7CZQ

S protein of SARS-CoV-2 in complex bound with P2B-1A10

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, CSpike glycoproteinpolymer1283142502.63UniProt (P0DTC2)
Pfam (PF16451)
Pfam (PF09408)
Pfam (PF19209)
Pfam (PF01601)
In PDB
Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)S glycoprotein,E2,Peplomer protein
2H, JIG c642_heavy_IGHV3-53_IGHD1-26_IGHJ6,Chain H of P2B-1A10,Immunoglobulin gamma-1 heavy chainpolymer45149104.22UniProt (A0A5C2GF00)
UniProt (P0DOX5)
Pfam (PF07686)
Pfam (PF07654)
In PDB
Homo sapiens (Human)Immunoglobulin gamma-1 heavy chain NIE
3K, NImmunoglobulin kappa variable 1-33,Uncharacterized proteinpolymer21523708.22UniProt (P01594)
UniProt (Q8TCD0)
Pfam (PF07654)
Pfam (PF07686)
In PDB
Homo sapiens (Human)Ig kappa chain V-I region AU,Ig kappa chain V-I region Ka
4a, b, D, E, F...2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.421In PDB
GlyTouCan (G42666HT)
5C, A, B2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.228Chemie (NAG)
Sequence modifications
A, B, C: 1 - 1273 (UniProt: P0DTC2)
PDBExternal DatabaseDetails
Pro 986Lys 986conflict
Pro 987Val 987conflict
Leu 1274-expression tag
Glu 1275-expression tag
Asp 1276-expression tag
Tyr 1277-expression tag
Lys 1278-expression tag
Asp 1279-expression tag
Asp 1280-expression tag
Asp 1281-expression tag
Asp 1282-expression tag
Lys 1283-expression tag
H, J: 1 - 97 (UniProt: A0A5C2GF00)
H, J: 98 - 116 (PDB: 7CZQ)
H, J: 117 - 451 (UniProt: P0DOX5)
K, N: 1 - 95 (UniProt: P01594)
PDBExternal DatabaseDetails
Phe 33Leu 55conflict
Met 96-linker
Tyr 97-linker
K, N: 98 - 215 (UniProt: Q8TCD0)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains7
Total formula weight573132.5
BranchedNumber of molecules21
Total formula weight8912.4
Non-Polymers*Number of molecules28
Total formula weight6193.8
All*Total formula weight588238.8
*Water molecules are not included.

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PDB entries from 2024-06-12

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