7CZQ
S protein of SARS-CoV-2 in complex bound with P2B-1A10
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1283 | 142502.6 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
| 2 | D, F (H, J) | IG c642_heavy_IGHV3-53_IGHD1-26_IGHJ6,Chain H of P2B-1A10,Immunoglobulin gamma-1 heavy chain | polymer | 451 | 49104.2 | 2 | UniProt (A0A5C2GF00) UniProt (P0DOX5) Pfam (PF07686) Pfam (PF07654) | Homo sapiens (Human) | Immunoglobulin gamma-1 heavy chain NIE |
| 3 | E, G (K, N) | Immunoglobulin kappa variable 1-33,Uncharacterized protein | polymer | 215 | 23708.2 | 2 | UniProt (P01594) UniProt (Q8TCD0) Pfam (PF07654) Pfam (PF07686) | Homo sapiens (Human) | Ig kappa chain V-I region AU,Ig kappa chain V-I region Ka |
| 4 | AA, BA, H, I, J... (a, b, D, E, F...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 21 | In PDB GlyTouCan (G42666HT) | |||
| 5 | AB, BB, CA, CB, DA... (C, A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 28 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1273 (UniProt: P0DTC2)
H, J: 1 - 97 (UniProt: A0A5C2GF00)
H, J: 98 - 116 (PDB: 7CZQ)
H, J: 117 - 451 (UniProt: P0DOX5)
K, N: 1 - 95 (UniProt: P01594)
K, N: 98 - 215 (UniProt: Q8TCD0)
| PDB | External Database | Details |
|---|---|---|
| Pro 986 | Lys 986 | conflict |
| Pro 987 | Val 987 | conflict |
| Leu 1274 | - | expression tag |
| Glu 1275 | - | expression tag |
| Asp 1276 | - | expression tag |
| Tyr 1277 | - | expression tag |
| Lys 1278 | - | expression tag |
| Asp 1279 | - | expression tag |
| Asp 1280 | - | expression tag |
| Asp 1281 | - | expression tag |
| Asp 1282 | - | expression tag |
| Lys 1283 | - | expression tag |
H, J: 98 - 116 (PDB: 7CZQ)
H, J: 117 - 451 (UniProt: P0DOX5)
K, N: 1 - 95 (UniProt: P01594)
| PDB | External Database | Details |
|---|---|---|
| Phe 33 | Leu 55 | conflict |
| Met 96 | - | linker |
| Tyr 97 | - | linker |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 7 |
| Total formula weight | 573132.5 | |
| Branched | Number of molecules | 21 |
| Total formula weight | 8912.4 | |
| Non-Polymers* | Number of molecules | 28 |
| Total formula weight | 6193.8 | |
| All* | Total formula weight | 588238.8 |
